DciA, the Bacterial Replicative Helicase Loader, Promotes LLPS in the Presence of ssDNA

The loading of the bacterial replicative helicase DnaB is an essential step for genome replication and depends on the assistance of accessory proteins. Several of these proteins have been identified across the bacterial phyla. DciA is the most common loading protein in bacteria, yet the one whose mechanism is the least understood. We have previously shown that DciA from Vibrio cholerae is composed of a globular domain followed by an unfolded extension and demonstrated its strong affinity for DNA. Here, we characterize the condensates formed by VcDciA upon interaction with a short single-stranded DNA substrate. We demonstrate the fluidity of these condensates using light microscopy and address their network organization through electron microscopy, thereby bridging events to conclude on a liquid-liquid phase separation behavior. Additionally, we observe the recruitment of DnaB in the droplets, concomitant with the release of DciA. We show that the well-known helicase loader DnaC from Escherichia coli is also competent to form these phase-separated condensates in the presence of ssDNA. Our phenomenological data are still preliminary as regards the existence of these condensates in vivo, but open the way for exploring the potential involvement of DciA in the formation of non-membrane compartments within the bacterium to facilitate the assembly of replication players on chromosomal DNA.

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Journal
Journal of Molecular Biology
Published
2024-11-26
DOI
https://doi.org/10.1016/j.jmb.2024.168873
Primary Topic
RNA modifications and cancer
Type
article
Field-Weighted Citation Impact
0.00

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article

DciA, the Bacterial Replicative Helicase Loader, Promotes LLPS in the Presence of ssDNA

Hélène Walbott, Emil G. P. Stender, Stéphanie Marsin, Éric Le Cam et al.
Journal of Molecular Biology
RNA modifications and cancer
article

DciA, the Bacterial Replicative Helicase Loader, Promotes LLPS in the Presence of ssDNA

Hélène Walbott, Emil G. P. Stender, Stéphanie Marsin, Éric Le Cam, Romain Le Bars, Gérard Péhau‐Arnaudet, Sylvain Jeannin, Sophie Quevillon‐Chéruel, Magali Noiray, Magali Aumont‐Nicaise, Sonia Baconnais, Claire Cargemel
article en

Abstract

The loading of the bacterial replicative helicase DnaB is an essential step for genome replication and depends on the assistance of accessory proteins. Several of these proteins have been identified across the bacterial phyla. DciA is the most common loading protein in bacteria, yet the one whose mechanism is the least understood. We have previously shown that DciA from Vibrio cholerae is composed of a globular domain followed by an unfolded extension and demonstrated its strong affinity for DNA. Here, we characterize the condensates formed by VcDciA upon interaction with a short single-stranded DNA substrate. We demonstrate the fluidity of these condensates using light microscopy and address their network organization through electron microscopy, thereby bridging events to conclude on a liquid-liquid phase separation behavior. Additionally, we observe the recruitment of DnaB in the droplets, concomitant with the release of DciA. We show that the well-known helicase loader DnaC from Escherichia coli is also competent to form these phase-separated condensates in the presence of ssDNA. Our phenomenological data are still preliminary as regards the existence of these condensates in vivo, but open the way for exploring the potential involvement of DciA in the formation of non-membrane compartments within the bacterium to facilitate the assembly of replication players on chromosomal DNA.

Journal of Molecular BiologyVol. 437(2)
Centre National de la Recherche Scientifique (FR), Institut Pasteur (FR), Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR), Université Paris-Saclay (FR), Institut Gustave Roussy (FR), Biosyntia (Denmark) (DK), Institut de Biologie Intégrative de la Cellule (FR), CEA Paris-Saclay (FR), Laboratoire de Biologie, Bioingéniérie et Bioimagerie ostéoarticulaire (FR)
Infrastructures en Biologie Santé et Agronomie, Equipex, Agence Nationale de la Recherche, Centre National de la Recherche Scientifique, French Infrastructure for Integrated Structural Biology
Openalex Percentile: Top 81%
RNA modifications and cancer
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