Biochemical and structural characterization of enzymes in the 4-hydroxybenzoate catabolic pathway of lignin-degrading white-rot fungi

White-rot fungi (WRF) are the most efficient lignin-degrading organisms in nature. However, their capacity to use lignin-related aromatic compounds, such as 4-hydroxybenzoate, as carbon sources has only been described recently. Previously, the hydroxyquinol pathway was proposed for the bioconversion of these compounds in fungi, but gene- and structure-function relationships of the full enzymatic pathway remain uncharacterized in any single fungal species. Here, we characterize seven enzymes from two WRF, Trametes versicolor and Gelatoporia subvermispora, which constitute a four-enzyme cascade from 4-hydroxybenzoate to β-ketoadipate via the hydroxyquinol pathway. Furthermore, we solve the crystal structure of four of these enzymes and identify mechanistic differences with the closest bacterial and fungal structural homologs. Overall, this research expands our understanding of aromatic catabolism by WRF and establishes an alternative strategy for the conversion of lignin-related compounds to the valuable molecule β-ketoadipate, contributing to the development of biological processes for lignin valorization.

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Publication Details

Journal
Cell Reports
Published
2024-11-26
DOI
https://doi.org/10.1016/j.celrep.2024.115002
Citations
14
Primary Topic
Enzyme-mediated dye degradation
Type
article
Field-Weighted Citation Impact
8.39

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article

Biochemical and structural characterization of enzymes in the 4-hydroxybenzoate catabolic pathway of lignin-degrading white-rot fungi

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Cell Reports
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article

Biochemical and structural characterization of enzymes in the 4-hydroxybenzoate catabolic pathway of lignin-degrading white-rot fungi

Alexa Schwartz, Morgan A. Ingraham, Sean P. Woodworth, Davinia Salvachúa, Andrew R. Pickford, Konstantinos Tornesakis, Kelsey J. Ramirez, Michael Zahn, Paul A. Cox, Eugene Kuatsjah, Zoe A. Kellermyer
article en
14 citations

Abstract

White-rot fungi (WRF) are the most efficient lignin-degrading organisms in nature. However, their capacity to use lignin-related aromatic compounds, such as 4-hydroxybenzoate, as carbon sources has only been described recently. Previously, the hydroxyquinol pathway was proposed for the bioconversion of these compounds in fungi, but gene- and structure-function relationships of the full enzymatic pathway remain uncharacterized in any single fungal species. Here, we characterize seven enzymes from two WRF, Trametes versicolor and Gelatoporia subvermispora, which constitute a four-enzyme cascade from 4-hydroxybenzoate to β-ketoadipate via the hydroxyquinol pathway. Furthermore, we solve the crystal structure of four of these enzymes and identify mechanistic differences with the closest bacterial and fungal structural homologs. Overall, this research expands our understanding of aromatic catabolism by WRF and establishes an alternative strategy for the conversion of lignin-related compounds to the valuable molecule β-ketoadipate, contributing to the development of biological processes for lignin valorization.

Cell ReportsVol. 43(12)
National Laboratory of the Rockies (US), University of Portsmouth (GB)
U.S. Department of Energy, Diamond Light Source, Joint Genome Institute, Office of Science, Biotechnology and Biological Sciences Research Council, Research England, Biological and Environmental Research
Zero hunger
Openalex Percentile: Top 2%
Enzyme-mediated dye degradation
8.39
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