Cross-amplification of microsatellite markers on the endangered tree species <i>Castanopsis argentea</i> from other <i>Castanopsis</i> species: a valuable tool for genetic diversity analysis

Castanopsis argentea is an endangered tree naturally distributed in Java and Sumatera Island and considered a keystone species in the submontane forest ecosystem. A laboratory study was conducted to test the cross-amplification potential of seven pairs of Castanopsis cuspidata var. sieboldii microsatellite markers to be used for Castanopsis argentea. The rate of cross-amplification success, average number of alleles per locus (NA), observed heterozygosity (HO), expected heterozygosity (HE), and fixation index (FIS) were determined, and cross-amplification potential was investigated. The rate of amplification success was 85.71% (6 out of 7 markers were successful amplified), NA was 7.67, HO ranged from 0.467 to 0.923, HE ranged from 0.441 to 0.745, and the fixation index (FIS) ranged from −0.413 to 0.278. Results indicate the high transferability of C. cuspidata var. sieboldii microsatellite markers to C. argentea. Six markers were suitable for genetic diversity and population genetic studies on C. argentea.

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Publication Details

Journal
Forest Science and Technology
Published
2024-11-24
DOI
https://doi.org/10.1080/21580103.2024.2429600
Citations
2
Primary Topic
Genetic diversity and population structure
Type
article
Field-Weighted Citation Impact
1.10

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article

Cross-amplification of microsatellite markers on the endangered tree species Castanopsis argentea from other Castanopsis species: a valuable tool for genetic diversity analysis

Bangun Baramantya, Sapto Indrioko, Eny Faridah, AYPBC Widyatmoko
2 citations
Forest Science and Technology
Genetic diversity and population structure
1.10
article

Cross-amplification of microsatellite markers on the endangered tree species Castanopsis argentea from other Castanopsis species: a valuable tool for genetic diversity analysis

Bangun Baramantya, Sapto Indrioko, Eny Faridah, AYPBC Widyatmoko
article en
2 citations

Abstract

Castanopsis argentea is an endangered tree naturally distributed in Java and Sumatera Island and considered a keystone species in the submontane forest ecosystem. A laboratory study was conducted to test the cross-amplification potential of seven pairs of Castanopsis cuspidata var. sieboldii microsatellite markers to be used for Castanopsis argentea. The rate of cross-amplification success, average number of alleles per locus (NA), observed heterozygosity (HO), expected heterozygosity (HE), and fixation index (FIS) were determined, and cross-amplification potential was investigated. The rate of amplification success was 85.71% (6 out of 7 markers were successful amplified), NA was 7.67, HO ranged from 0.467 to 0.923, HE ranged from 0.441 to 0.745, and the fixation index (FIS) ranged from −0.413 to 0.278. Results indicate the high transferability of C. cuspidata var. sieboldii microsatellite markers to C. argentea. Six markers were suitable for genetic diversity and population genetic studies on C. argentea.

Forest Science and TechnologyVol. 21(1)
Parks Canada (CA), Universitas Gadjah Mada (ID)
Universitas Gadjah Mada
Life in Land
Openalex Percentile: Top 18%
Genetic diversity and population structure
1.10
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Cross-amplification of microsatellite markers on the endangered tree species <i>Castanopsis argentea</i> from other <i>Castanopsis</i> species: a valuable tool for genetic diversity analysis — Bangun Baramantya, Sapto Indrioko, et al. · Forest Science and Technology (2024) | TGRS Research Map | TGRS