PhyloX: A Python package for complete phylogeneticnetwork workflows

PhyloX is a Python package with tools for generating, manipulating, and analysing phylogenetic networks.It uses the NetworkX package (Hagberg et al., 2008) for basic graph operations.This has the added benefit that the powerful graph tools from NetworkX can be used directly on the phylogenetic networks as well.The aim of the package is to be of general use to phylogenetic network researchers, with a current focus on I/O, random generation of networks, cherry-picking methods, rearrangement operations, and the identification of classes and properties of networks.

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Publication Details

Journal
The Journal of Open Source Software
Published
2024-11-24
DOI
https://doi.org/10.21105/joss.06427
Citations
1
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.23
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article

PhyloX: A Python package for complete phylogeneticnetwork workflows

Remie Janssen
1 citations
The Journal of Open Source Software
Genomics and Phylogenetic Studies
0.23
article

PhyloX: A Python package for complete phylogeneticnetwork workflows

Remie Janssen
article en
1 citations

Abstract

PhyloX is a Python package with tools for generating, manipulating, and analysing phylogenetic networks.It uses the NetworkX package (Hagberg et al., 2008) for basic graph operations.This has the added benefit that the powerful graph tools from NetworkX can be used directly on the phylogenetic networks as well.The aim of the package is to be of general use to phylogenetic network researchers, with a current focus on I/O, random generation of networks, cherry-picking methods, rearrangement operations, and the identification of classes and properties of networks.

The Journal of Open Source SoftwareVol. 9(103)
National Institute for Public Health and the Environment (NL)
Openalex Percentile: Top 41%
Genomics and Phylogenetic Studies
0.23
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