Thermodynamic Transferability in Coarse-Grained Force Fields Using Graph Neural Networks

Coarse-graining is a molecular modeling technique in which an atomistic system is represented in a simplified fashion that retains the most significant system features that contribute to a target output while removing the degrees of freedom that are less relevant. This reduction in model complexity allows coarse-grained molecular simulations to reach increased spatial and temporal scales compared with corresponding all-atom models. A core challenge in coarse-graining is to construct a force field that represents the interactions in the new representation in a way that preserves the atomistic-level properties. Many approaches to building coarse-grained force fields have limited transferability between different thermodynamic conditions as a result of averaging over internal fluctuations at a specific thermodynamic state point. Here, we use a graph-convolutional neural network architecture, the Hierarchically Interacting Particle Neural Network with Tensor Sensitivity (HIP-NN-TS), to develop a highly automated training pipeline for coarse-grained force fields, which allows for studying the transferability of coarse-grained models based on the force-matching approach. We show that this approach yields not only highly accurate force fields but also that these force fields are more transferable through a variety of thermodynamic conditions. These results illustrate the potential of machine learning techniques, such as graph neural networks, to improve the construction of transferable coarse-grained force fields.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2024-11-23
DOI
https://doi.org/10.1021/acs.jctc.4c00788
Citations
7
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.82

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article

Thermodynamic Transferability in Coarse-Grained Force Fields Using Graph Neural Networks

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7 citations
Journal of Chemical Theory and Computation
Machine Learning in Materials Science
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article

Thermodynamic Transferability in Coarse-Grained Force Fields Using Graph Neural Networks

Riti Bahl, Nicholas Lubbers, Aleksandra Pachalieva, Galen T. Craven, Brendan J. Gifford, Sakib Matin, Emily Shinkle
article en
7 citations

Abstract

Coarse-graining is a molecular modeling technique in which an atomistic system is represented in a simplified fashion that retains the most significant system features that contribute to a target output while removing the degrees of freedom that are less relevant. This reduction in model complexity allows coarse-grained molecular simulations to reach increased spatial and temporal scales compared with corresponding all-atom models. A core challenge in coarse-graining is to construct a force field that represents the interactions in the new representation in a way that preserves the atomistic-level properties. Many approaches to building coarse-grained force fields have limited transferability between different thermodynamic conditions as a result of averaging over internal fluctuations at a specific thermodynamic state point. Here, we use a graph-convolutional neural network architecture, the Hierarchically Interacting Particle Neural Network with Tensor Sensitivity (HIP-NN-TS), to develop a highly automated training pipeline for coarse-grained force fields, which allows for studying the transferability of coarse-grained models based on the force-matching approach. We show that this approach yields not only highly accurate force fields but also that these force fields are more transferable through a variety of thermodynamic conditions. These results illustrate the potential of machine learning techniques, such as graph neural networks, to improve the construction of transferable coarse-grained force fields.

Journal of Chemical Theory and ComputationVol. 20(23)
Los Alamos National Laboratory (US), Emory University (US)
Los Alamos National Laboratory
Openalex Percentile: Top 25%
Machine Learning in Materials Science
0.82
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