Thermodynamic Transferability in Coarse-Grained Force Fields Using Graph Neural Networks
Coarse-graining is a molecular modeling technique in which an atomistic system is represented in a simplified fashion that retains the most significant system features that contribute to a target output while removing the degrees of freedom that are less relevant. This reduction in model complexity allows coarse-grained molecular simulations to reach increased spatial and temporal scales compared with corresponding all-atom models. A core challenge in coarse-graining is to construct a force field that represents the interactions in the new representation in a way that preserves the atomistic-level properties. Many approaches to building coarse-grained force fields have limited transferability between different thermodynamic conditions as a result of averaging over internal fluctuations at a specific thermodynamic state point. Here, we use a graph-convolutional neural network architecture, the Hierarchically Interacting Particle Neural Network with Tensor Sensitivity (HIP-NN-TS), to develop a highly automated training pipeline for coarse-grained force fields, which allows for studying the transferability of coarse-grained models based on the force-matching approach. We show that this approach yields not only highly accurate force fields but also that these force fields are more transferable through a variety of thermodynamic conditions. These results illustrate the potential of machine learning techniques, such as graph neural networks, to improve the construction of transferable coarse-grained force fields.
Authors
- Riti Bahl
- Nicholas Lubbers (ORCID: https://orcid.org/0000-0002-9001-9973)
- Aleksandra Pachalieva (ORCID: https://orcid.org/0000-0003-1246-0410)
- Galen T. Craven (ORCID: https://orcid.org/0000-0001-5117-2345)
- Brendan J. Gifford (ORCID: https://orcid.org/0000-0002-4116-711X)
- Sakib Matin (ORCID: https://orcid.org/0000-0001-5166-2838)
- Emily Shinkle (ORCID: https://orcid.org/0000-0003-2255-0540)
Institutions
- Los Alamos National Laboratory (US)
- Emory University (US)
Publication Details
- Journal
- Journal of Chemical Theory and Computation
- Published
- 2024-11-23
- DOI
- https://doi.org/10.1021/acs.jctc.4c00788
- Citations
- 7
- Primary Topic
- Machine Learning in Materials Science
- Type
- article
- Field-Weighted Citation Impact
- 0.82
Funders
- Los Alamos National Laboratory