Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
In May and June of 2021, marine microbial samples were collected for DNA sequencing in East Sound, WA, USA every 4 hours for 22 days. This high temporal resolution sampling effort captured the last 3 days of a Rhizosolenia sp. bloom, the initiation and complete bloom cycle of Chaetoceros socialis (8 days), and the following bacterial bloom (2 days). Metagenomes were completed on the time series, and the dataset includes 128 size-fractionated microbial samples (0.22-1.2 µm), providing gene abundances for the dominant members of bacteria, archaea, and viruses. This dataset also has time-matched nutrient analyses, flow cytometry data, and physical parameters of the environment at a single point of sampling within a coastal ecosystem that experiences regular bloom events, facilitating a range of modeling efforts that can be leveraged to understand microbial community structure and their influences on the growth, maintenance, and senescence of phytoplankton blooms.
Authors
- Deanna L. Plubell (ORCID: https://orcid.org/0000-0002-6580-8073)
- Elizabeth L. Harvey (ORCID: https://orcid.org/0000-0002-3518-0035)
- Simon Roux (ORCID: https://orcid.org/0000-0002-5831-5895)
- Marcel Huntemann (ORCID: https://orcid.org/0000-0002-1284-3748)
- Nikos C. Kyrpides (ORCID: https://orcid.org/0000-0002-6131-0462)
- Tijana Glavina Del Rio
- Supratim Mukherjee (ORCID: https://orcid.org/0000-0002-6322-2271)
- Alex Copeland (ORCID: https://orcid.org/0000-0002-3971-5439)
- Emma Timmins‐Schiffman (ORCID: https://orcid.org/0000-0002-2478-6541)
- Krishna Palaniappan (ORCID: https://orcid.org/0000-0003-4484-7505)
- Chris Daum (ORCID: https://orcid.org/0000-0003-3895-5892)
- I-Min A. Chen (ORCID: https://orcid.org/0000-0003-2026-9798)
- T. B. K. Reddy (ORCID: https://orcid.org/0000-0002-0871-5567)
- Gabriella Chebli (ORCID: https://orcid.org/0000-0002-4533-7470)
- William Stafford Noble (ORCID: https://orcid.org/0000-0001-7283-4715)
- Emiley A. Eloe‐Fadrosh (ORCID: https://orcid.org/0000-0002-8162-1276)
- Michael Riffle (ORCID: https://orcid.org/0000-0003-1633-8607)
- Bryce Foster (ORCID: https://orcid.org/0000-0002-5982-0674)
- Julia Kubanek (ORCID: https://orcid.org/0000-0003-4482-1831)
- Miranda C. Mudge (ORCID: https://orcid.org/0000-0003-3769-5937)
- Brook L. Nunn (ORCID: https://orcid.org/0000-0002-7361-4359)
- Natalia Ivanova (ORCID: https://orcid.org/0000-0002-5802-9485)
- Tasman A. Nunn (ORCID: https://orcid.org/0009-0004-1089-9395)
- Brian Foster (ORCID: https://orcid.org/0000-0002-9290-9590)
Institutions
- Georgia Institute of Technology (US)
- Lawrence Berkeley National Laboratory (US)
- University of New Hampshire (US)
- University of Rhode Island (US)
- Joint Genome Institute (US)
- University of Washington (US)
- Seattle Public Schools (US)
Publication Details
- Journal
- Scientific Data
- Published
- 2024-11-22
- DOI
- https://doi.org/10.1038/s41597-024-04013-5
- Citations
- 4
- Primary Topic
- Microbial Community Ecology and Physiology
- Type
- article
- Field-Weighted Citation Impact
- 1.84
Funders
- National Science Foundation
- U.S. Department of Energy
- University of Washington
- Joint Genome Institute
- National Institutes of Health
- Office of Science
- National Institute of Environmental Health Sciences