Complete chloroplast genome sequence of <i>Solanum mochiquense</i> , one of the tuber-bearing potato relatives

<i>Solanum mochiquense</i> is one of the wild tuber-bearing <i>Solanum</i> species belonging to the Solanaceae family. In this study, the chloroplast genome sequence of the species was completed with Illumina sequencing technology. The total length of the chloroplast genome is 155,547 bp with a GC content of 37.87%. It comprises a large single copy (LSC) region of 85,941 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,612 bp. Additionally, 158 functional genes in the genome were identified, including 105 protein-coding genes, eight ribosomal RNA genes, and 45 transfer RNA genes. Phylogenetic analysis revealed that <i>S. mochiquense</i> is grouped into a large clade with other <i>Solanum</i> species including cultivated potatoes (<i>S. tuberosum</i>). This study provides useful genomic information for future breeding and evolutionary studies of <i>S. mochiquense</i> and other <i>Solanum</i> species.

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Publication Details

Journal
Mitochondrial DNA Part B
Published
2024-11-21
DOI
https://doi.org/10.1080/23802359.2024.2432357
Citations
1
Primary Topic
Plant Pathogens and Resistance
Type
article
Field-Weighted Citation Impact
0.60

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article

Complete chloroplast genome sequence of Solanum mochiquense , one of the tuber-bearing potato relatives

Tae H. Park
1 citations
Mitochondrial DNA Part B
Plant Pathogens and Resistance
0.60
article

Complete chloroplast genome sequence of Solanum mochiquense , one of the tuber-bearing potato relatives

Tae H. Park
article en
1 citations

Abstract

<i>Solanum mochiquense</i> is one of the wild tuber-bearing <i>Solanum</i> species belonging to the Solanaceae family. In this study, the chloroplast genome sequence of the species was completed with Illumina sequencing technology. The total length of the chloroplast genome is 155,547 bp with a GC content of 37.87%. It comprises a large single copy (LSC) region of 85,941 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,612 bp. Additionally, 158 functional genes in the genome were identified, including 105 protein-coding genes, eight ribosomal RNA genes, and 45 transfer RNA genes. Phylogenetic analysis revealed that <i>S. mochiquense</i> is grouped into a large clade with other <i>Solanum</i> species including cultivated potatoes (<i>S. tuberosum</i>). This study provides useful genomic information for future breeding and evolutionary studies of <i>S. mochiquense</i> and other <i>Solanum</i> species.

Mitochondrial DNA Part BVol. 9(11)
Daegu University (KR)
Daegu University
Zero hunger
Openalex Percentile: Top 21%
Plant Pathogens and Resistance
0.60
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Complete chloroplast genome sequence of <i>Solanum mochiquense</i> , one of the tuber-bearing potato relatives — Tae H. Park · Mitochondrial DNA Part B (2024) | TGRS Research Map | TGRS