Accelerating Molecular Dynamics Simulations Using Socket-Based Interprocess Communication
Molecular dynamics (MD) simulations are essential for studying the time evolution of molecular systems. Still, their efficiency is often bottlenecked by file-based interprocess communication (IPC) between MD and electronic structure programs. We present a socket-based IPC implementation that dramatically accelerates MD simulations, reducing the computational time by >10-fold compared to those of traditional file-based methods. Our approach, applied to nonadiabatic molecular dynamics with the Newton-X program, eliminates disk read/write overhead, allowing for faster simulations over longer time scales. This method opens the door to more efficient high-throughput simulations, providing new opportunities for exploring complex molecular processes in real time.
Authors
- Matheus de Oliveira Bispo (ORCID: https://orcid.org/0000-0001-8597-5875)
- Mario Barbatti (ORCID: https://orcid.org/0000-0001-9336-6607)
Institutions
- Centre National de la Recherche Scientifique (FR)
- Institut Universitaire de France (FR)
- Aix-Marseille Université (FR)
- Institut de Chimie Radicalaire (FR)
Publication Details
- Journal
- The Journal of Physical Chemistry Letters
- Published
- 2024-11-21
- DOI
- https://doi.org/10.1021/acs.jpclett.4c02860
- Citations
- 2
- Primary Topic
- Machine Learning in Materials Science
- Type
- article
- Field-Weighted Citation Impact
- 0.23
Funders
- Aix-Marseille Université
- Fondation Aix-Marseille Universite
- H2020 European Research Council