In-context learning enables multimodal large language models to classify cancer pathology images

Medical image classification requires labeled, task-specific datasets which are used to train deep learning networks de novo, or to fine-tune foundation models. However, this process is computationally and technically demanding. In language processing, in-context learning provides an alternative, where models learn from within prompts, bypassing the need for parameter updates. Yet, in-context learning remains underexplored in medical image analysis. Here, we systematically evaluate the model Generative Pretrained Transformer 4 with Vision capabilities (GPT-4V) on cancer image processing with in-context learning on three cancer histopathology tasks of high importance: Classification of tissue subtypes in colorectal cancer, colon polyp subtyping and breast tumor detection in lymph node sections. Our results show that in-context learning is sufficient to match or even outperform specialized neural networks trained for particular tasks, while only requiring a minimal number of samples. In summary, this study demonstrates that large vision language models trained on non-domain specific data can be applied out-of-the box to solve medical image-processing tasks in histopathology. This democratizes access of generalist AI models to medical experts without technical background especially for areas where annotated data is scarce.

Authors

Institutions

Publication Details

Journal
Nature Communications
Published
2024-11-21
DOI
https://doi.org/10.1038/s41467-024-51465-9
Citations
108
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
37.52

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

In-context learning enables multimodal large language models to classify cancer pathology images

Dirk Jäger, Daniel Truhn, Isabella C. Wiest, Srividhya Sainath et al.
108 citations
Nature Communications
AI in cancer detection
37.52
article

In-context learning enables multimodal large language models to classify cancer pathology images

Dirk Jäger, Daniel Truhn, Isabella C. Wiest, Srividhya Sainath, Dyke Ferber, Gustav Müller‐Franzes, Georg Wölflein, Marta Ligero, Narmin Ghaffari Laleh, Jakob Nikolas Kather, Omar S. M. El Nahhas
article en
108 citations

Abstract

Medical image classification requires labeled, task-specific datasets which are used to train deep learning networks de novo, or to fine-tune foundation models. However, this process is computationally and technically demanding. In language processing, in-context learning provides an alternative, where models learn from within prompts, bypassing the need for parameter updates. Yet, in-context learning remains underexplored in medical image analysis. Here, we systematically evaluate the model Generative Pretrained Transformer 4 with Vision capabilities (GPT-4V) on cancer image processing with in-context learning on three cancer histopathology tasks of high importance: Classification of tissue subtypes in colorectal cancer, colon polyp subtyping and breast tumor detection in lymph node sections. Our results show that in-context learning is sufficient to match or even outperform specialized neural networks trained for particular tasks, while only requiring a minimal number of samples. In summary, this study demonstrates that large vision language models trained on non-domain specific data can be applied out-of-the box to solve medical image-processing tasks in histopathology. This democratizes access of generalist AI models to medical experts without technical background especially for areas where annotated data is scarce.

Nature CommunicationsVol. 15(1)
University of St Andrews (GB), Heidelberg University (DE), University Hospital Heidelberg (DE), Fresenius (Germany) (DE), National Center for Tumor Diseases (DE), Universitätsklinikum Aachen (DE), University Medical Centre Mannheim (DE), Technische Universität Dresden (DE)
National Institute for Health and Care Research, Department of Health and Social Care, European Commission, Deutscher Akademischer Austauschdienst, Bundesministerium für Bildung und Forschung, Bundesministerium für Gesundheit, Deutsche Krebshilfe, Gemeinsame Bundesausschuss, HORIZON EUROPE Framework Programme
Quality Education
Openalex Percentile: Top 0%
AI in cancer detection
37.52
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.