Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python
pytximport is licensed under the GNU General Public License version 3. The source code is available at https://github.com/complextissue/pytximport and via Zenodo with DOI: 10.5281/zenodo.13907917. A related Snakemake workflow is available through GitHub at https://github.com/complextissue/snakemake-bulk-rna-seq-workflow and Zenodo with DOI: 10.5281/zenodo.12713811. Documentation and a vignette for new users are available at: https://pytximport.readthedocs.io.
Authors
- Stefan Bonn (ORCID: https://orcid.org/0000-0003-4366-5662)
- Malte Kuehl (ORCID: https://orcid.org/0000-0003-4167-2498)
- Victor G. Puelles (ORCID: https://orcid.org/0000-0002-7735-5462)
- Nicola Wanner (ORCID: https://orcid.org/0000-0002-4886-7020)
- Milagros N. Wong (ORCID: https://orcid.org/0009-0008-6372-7094)
Institutions
- Universität Hamburg (DE)
- Aarhus University (DK)
- Aarhus University Hospital (DK)
- University Medical Center Hamburg-Eppendorf (DE)
Publication Details
- Journal
- Bioinformatics
- Published
- 2024-11-20
- DOI
- https://doi.org/10.1093/bioinformatics/btae700
- Citations
- 2
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.47
Funders
- Deutsche Forschungsgemeinschaft
- Bundesministerium für Bildung und Forschung