Genome-Based Mining of Carpatamides I–M and Their Candidate Biosynthetic Gene Cluster

Chemically investigating the marine-derived <i>Streptomyces parvus</i> 1268 led to the isolation of a new compound of carpatamide I (<b>1</b>). Subsequent genomic analysis identified its candidate biosynthetic gene cluster <i>ctd</i> of approximately 44 kb. In order to obtain more carpatamide derivatives, we conducted the upregulation of Ctd14, which is a positive regulator, and obtained improvement of carpatamide I and four new compounds of carpatamides J-M (<b>2</b>-<b>5</b>). The structures of the aforementioned five new isolates were identified by a combination of ESI-HRMS as well as one-dimensional (1D) and two-dimensional (2D) spectral NMR datasets. Bioassay results showed that compounds <b>1</b>-<b>5</b> displayed anti-inflammatory activity and weak cytotoxicity against cell lines of A549, HT-29, and HepG2.

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Publication Details

Journal
Marine Drugs
Published
2024-11-20
DOI
https://doi.org/10.3390/md22110521
Citations
3
Primary Topic
Microbial Natural Products and Biosynthesis
Type
article
Field-Weighted Citation Impact
1.34

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article

Genome-Based Mining of Carpatamides I–M and Their Candidate Biosynthetic Gene Cluster

Yuhui Sun, Li‐Chun Tu, Yanmin Wang, Minghe Luo et al.
3 citations
Marine Drugs
Microbial Natural Products and Biosynthesis
1.34
article

Genome-Based Mining of Carpatamides I–M and Their Candidate Biosynthetic Gene Cluster

Yuhui Sun, Li‐Chun Tu, Yanmin Wang, Minghe Luo, Yunchang Xie, Chunhui Song, Monica Z. Wu, S. C. Shen
article en
3 citations

Abstract

Chemically investigating the marine-derived <i>Streptomyces parvus</i> 1268 led to the isolation of a new compound of carpatamide I (<b>1</b>). Subsequent genomic analysis identified its candidate biosynthetic gene cluster <i>ctd</i> of approximately 44 kb. In order to obtain more carpatamide derivatives, we conducted the upregulation of Ctd14, which is a positive regulator, and obtained improvement of carpatamide I and four new compounds of carpatamides J-M (<b>2</b>-<b>5</b>). The structures of the aforementioned five new isolates were identified by a combination of ESI-HRMS as well as one-dimensional (1D) and two-dimensional (2D) spectral NMR datasets. Bioassay results showed that compounds <b>1</b>-<b>5</b> displayed anti-inflammatory activity and weak cytotoxicity against cell lines of A549, HT-29, and HepG2.

Marine DrugsVol. 22(11)
Huazhong University of Science and Technology (CN), Chongqing University of Technology (CN), Jiangxi Normal University (CN)
National Natural Science Foundation of China, Chongqing University, Chongqing University of Technology, Natural Science Foundation of Chongqing, Centre Scientifique et Technique du Bâtiment
Life below water
Openalex Percentile: Top 18%
Microbial Natural Products and Biosynthesis
1.34
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Genome-Based Mining of Carpatamides I–M and Their Candidate Biosynthetic Gene Cluster — Yuhui Sun, Li‐Chun Tu, et al. · Marine Drugs (2024) | TGRS Research Map | TGRS