Oxidative Stress-Associated Alteration of circRNA and Their ceRNA Network in Differentiating Neuroblasts

Oxidative stress from environmental exposures is thought to play a role in neurodevelopmental disorders; therefore, understanding the underlying molecular regulatory network is essential for mitigating its impacts. In this study, we analysed the competitive endogenous RNA (ceRNA) network mediated by circRNAs, a novel class of regulatory molecules, in an SH-SY5Y cell model of oxidative stress, both prior to and during neural differentiation, using RNA sequencing and in silico analysis. We identified 146 differentially expressed circRNAs, including 93 upregulated and 53 downregulated circRNAs, many of which were significantly co-expressed with mRNAs that potentially interact with miRNAs. We constructed a circRNA-miRNA-mRNA network and identified 15 circRNAs serving as hubs within the regulatory axes, with target genes enriched in stress- and neuron-related pathways, such as <i>signaling by VEGF</i>, <i>axon guidance</i>, <i>signaling by FGFR</i>, and the <i>RAF/MAP kinase cascade</i>. These findings provide insights into the role of the circRNA-mediated ceRNA network in oxidative stress during neuronal differentiation, which may help explain the regulatory mechanisms underlying neurodevelopmental disorders associated with oxidative stress.

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Journal
International Journal of Molecular Sciences
Published
2024-11-20
DOI
https://doi.org/10.3390/ijms252212459
Citations
3
Primary Topic
Circular RNAs in diseases
Type
article
Field-Weighted Citation Impact
0.70
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article

Oxidative Stress-Associated Alteration of circRNA and Their ceRNA Network in Differentiating Neuroblasts

Murray J. Cairns, Behnaz Khavari, Ebrahim Mahmoudi
3 citations
International Journal of Molecular Sciences
Circular RNAs in diseases
0.70
article

Oxidative Stress-Associated Alteration of circRNA and Their ceRNA Network in Differentiating Neuroblasts

Murray J. Cairns, Behnaz Khavari, Ebrahim Mahmoudi
article en
3 citations

Abstract

Oxidative stress from environmental exposures is thought to play a role in neurodevelopmental disorders; therefore, understanding the underlying molecular regulatory network is essential for mitigating its impacts. In this study, we analysed the competitive endogenous RNA (ceRNA) network mediated by circRNAs, a novel class of regulatory molecules, in an SH-SY5Y cell model of oxidative stress, both prior to and during neural differentiation, using RNA sequencing and in silico analysis. We identified 146 differentially expressed circRNAs, including 93 upregulated and 53 downregulated circRNAs, many of which were significantly co-expressed with mRNAs that potentially interact with miRNAs. We constructed a circRNA-miRNA-mRNA network and identified 15 circRNAs serving as hubs within the regulatory axes, with target genes enriched in stress- and neuron-related pathways, such as <i>signaling by VEGF</i>, <i>axon guidance</i>, <i>signaling by FGFR</i>, and the <i>RAF/MAP kinase cascade</i>. These findings provide insights into the role of the circRNA-mediated ceRNA network in oxidative stress during neuronal differentiation, which may help explain the regulatory mechanisms underlying neurodevelopmental disorders associated with oxidative stress.

International Journal of Molecular SciencesVol. 25(22)
Hunter Medical Research Institute (AU), University of Newcastle Australia (AU)
Life in Land
Openalex Percentile: Top 29%
Circular RNAs in diseases
0.70
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