Proposal of <i>Patescibacterium danicum</i> gen. nov., sp. nov. in the ubiquitous bacterial phylum <i>Patescibacteriota</i> phyl. nov.

<i>Candidatus</i> Patescibacteria is a diverse bacterial phylum that is notable for members with ultrasmall cell size, reduced genomes, limited metabolic capabilities, and dependence on other prokaryotic hosts. Despite the prevalence of the name <i>Ca</i>. Patescibacteria in the scientific literature, it is not officially recognized under the International Code of Nomenclature of Prokaryotes and lacks a nomenclatural type. Here, we rectify this situation by describing two closely related circular metagenome-assembled genomes and by proposing one of them (ABY1<sup>TS</sup>) to serve as the nomenclatural type for the species <i>Patescibacterium danicum</i> <sup>TS</sup> gen. nov., sp. nov. according to the rules of the SeqCode. Rank-normalized phylogenomic inference confirmed the stable placement of <i>P. danicum</i> <sup>TS</sup> in the <i>Ca.</i> Patescibacteria class ABY1. Based on these results, we propose <i>Patescibacterium</i> gen. nov. to serve as the type genus for associated higher taxa, including the phylum <i>Patescibacteriota</i> phyl. nov. We complement our proposal with a genomic characterization, metabolic reconstruction, and biogeographical analysis of <i>Patescibacterium</i>. Our results confirm small genome sizes (<1 Mbp), low GC content (>36%), and the occurrence of long gene coding insertions in the 23S rRNA sequences, along with reduced metabolic potential, inferred symbiotic lifestyle, and a global distribution. In summary, our proposal will provide nomenclatural stability to the fourth-largest phylum in the bacterial domain.

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Journal
ISME Communications
Published
2024-11-18
DOI
https://doi.org/10.1093/ismeco/ycae147
Citations
10
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
2.34

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article

Proposal of Patescibacterium danicum gen. nov., sp. nov. in the ubiquitous bacterial phylum Patescibacteriota phyl. nov.

Maria Chuvochina, Tanja Woyke, Caitlin M. Singleton, Juan C. Villada et al.
10 citations
ISME Communications
Genomics and Phylogenetic Studies
2.34
article

Proposal of Patescibacterium danicum gen. nov., sp. nov. in the ubiquitous bacterial phylum Patescibacteriota phyl. nov.

Maria Chuvochina, Tanja Woyke, Caitlin M. Singleton, Juan C. Villada, Mads Albertsen, Per Halkjær Nielsen, Frederik Schulz, Mantas Sereika, Philip Hugenholtz, Aaron J. Mussig, Christian Rinke, Zuzanna Dutkiewicz
article en
10 citations

Abstract

<i>Candidatus</i> Patescibacteria is a diverse bacterial phylum that is notable for members with ultrasmall cell size, reduced genomes, limited metabolic capabilities, and dependence on other prokaryotic hosts. Despite the prevalence of the name <i>Ca</i>. Patescibacteria in the scientific literature, it is not officially recognized under the International Code of Nomenclature of Prokaryotes and lacks a nomenclatural type. Here, we rectify this situation by describing two closely related circular metagenome-assembled genomes and by proposing one of them (ABY1<sup>TS</sup>) to serve as the nomenclatural type for the species <i>Patescibacterium danicum</i> <sup>TS</sup> gen. nov., sp. nov. according to the rules of the SeqCode. Rank-normalized phylogenomic inference confirmed the stable placement of <i>P. danicum</i> <sup>TS</sup> in the <i>Ca.</i> Patescibacteria class ABY1. Based on these results, we propose <i>Patescibacterium</i> gen. nov. to serve as the type genus for associated higher taxa, including the phylum <i>Patescibacteriota</i> phyl. nov. We complement our proposal with a genomic characterization, metabolic reconstruction, and biogeographical analysis of <i>Patescibacterium</i>. Our results confirm small genome sizes (<1 Mbp), low GC content (>36%), and the occurrence of long gene coding insertions in the 23S rRNA sequences, along with reduced metabolic potential, inferred symbiotic lifestyle, and a global distribution. In summary, our proposal will provide nomenclatural stability to the fourth-largest phylum in the bacterial domain.

ISME CommunicationsVol. 5(1)
Lawrence Berkeley National Laboratory (US), The University of Queensland (AU), Universität Innsbruck (AT), Joint Genome Institute (US), Ecogenomics (Japan) (JP), Aalborg University (DK)
U.S. Department of Energy, Villum Fonden, Joint Genome Institute, Universität Innsbruck, Office of Science
Openalex Percentile: Top 11%
Genomics and Phylogenetic Studies
2.34
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