Drug–target interaction prediction by integrating heterogeneous information with mutual attention network
DrugMAN achieved the best performance compared with cheminformation-based methods SVM, RF, DeepPurpose and network-based deep learing methods DTINet and NeoDT in four different scenarios, especially in real-world scenarios. Compared with SVM, RF, deepurpose, DTINet, and NeoDT, DrugMAN showed the smallest decrease in AUROC, AUPRC, and F1-Score from warm-start to Both-cold scenarios. This result is attributed to DrugMAN's learning from heterogeneous data and indicates that DrugMAN has a good generalization ability. Taking together, DrugMAN spotlights heterogeneous information to mine drug-target interactions and can be a powerful tool for drug discovery and drug repurposing.
Authors
- Aoyi Wang
- Lingmin Zhan
- Wuxia Zhang (ORCID: https://orcid.org/0000-0002-0759-2489)
- Yingdong Wang (ORCID: https://orcid.org/0000-0001-5510-3160)
- Jianxin Chen (ORCID: https://orcid.org/0000-0003-4067-5638)
- Peng Li (ORCID: https://orcid.org/0000-0001-7226-4214)
- Yuanyuan Zhang (ORCID: https://orcid.org/0000-0003-3935-3201)
- Jinzhong Zhao
- Caiping Cheng
Institutions
- Shanxi Agricultural University (CN)
- Beijing University of Chinese Medicine (CN)
Publication Details
- Journal
- BMC Bioinformatics
- Published
- 2024-11-19
- DOI
- https://doi.org/10.1186/s12859-024-05976-3
- Citations
- 20
- Primary Topic
- Computational Drug Discovery Methods
- Type
- article
- Field-Weighted Citation Impact
- 7.23
Funders
- Shanxi Agricultural University