Drug–target interaction prediction by integrating heterogeneous information with mutual attention network

DrugMAN achieved the best performance compared with cheminformation-based methods SVM, RF, DeepPurpose and network-based deep learing methods DTINet and NeoDT in four different scenarios, especially in real-world scenarios. Compared with SVM, RF, deepurpose, DTINet, and NeoDT, DrugMAN showed the smallest decrease in AUROC, AUPRC, and F1-Score from warm-start to Both-cold scenarios. This result is attributed to DrugMAN's learning from heterogeneous data and indicates that DrugMAN has a good generalization ability. Taking together, DrugMAN spotlights heterogeneous information to mine drug-target interactions and can be a powerful tool for drug discovery and drug repurposing.

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Publication Details

Journal
BMC Bioinformatics
Published
2024-11-19
DOI
https://doi.org/10.1186/s12859-024-05976-3
Citations
20
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
7.23

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Drug–target interaction prediction by integrating heterogeneous information with mutual attention network

Aoyi Wang, Lingmin Zhan, Wuxia Zhang, Yingdong Wang et al.
20 citations
BMC Bioinformatics
Computational Drug Discovery Methods
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article

Drug–target interaction prediction by integrating heterogeneous information with mutual attention network

Aoyi Wang, Lingmin Zhan, Wuxia Zhang, Yingdong Wang, Jianxin Chen, Peng Li, Yuanyuan Zhang, Jinzhong Zhao, Caiping Cheng
article en
20 citations

Abstract

DrugMAN achieved the best performance compared with cheminformation-based methods SVM, RF, DeepPurpose and network-based deep learing methods DTINet and NeoDT in four different scenarios, especially in real-world scenarios. Compared with SVM, RF, deepurpose, DTINet, and NeoDT, DrugMAN showed the smallest decrease in AUROC, AUPRC, and F1-Score from warm-start to Both-cold scenarios. This result is attributed to DrugMAN's learning from heterogeneous data and indicates that DrugMAN has a good generalization ability. Taking together, DrugMAN spotlights heterogeneous information to mine drug-target interactions and can be a powerful tool for drug discovery and drug repurposing.

BMC BioinformaticsVol. 25(1)
Shanxi Agricultural University (CN), Beijing University of Chinese Medicine (CN)
Shanxi Agricultural University
Openalex Percentile: Top 2%
Computational Drug Discovery Methods
7.23
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