Automatic Feature Selection for Atom-Centered Neural Network Potentials Using a Gradient Boosting Decision Algorithm

Atom-centered neural network (ANN) potentials have shown high accuracy and computational efficiency in modeling atomic systems. A crucial step in developing reliable ANN potentials is the proper selection of atom-centered symmetry functions (ACSFs), also known as atomic features, to describe atomic environments. Inappropriate selection of ACSFs can lead to poor-quality ANN potentials. Here, we propose a gradient boosting decision tree (GBDT)-based framework for the automatic selection of optimal ACSFs. This framework takes uniformly distributed sets of ACSFs as input and evaluates their relative importance. The ACSFs with high average importance scores are selected and used to train an ANN potential. We applied this method to the Ge system, resulting in an ANN potential with root-mean-square errors (RMSE) of 10.2 meV/atom for energy and 84.8 meV/Å for force predictions, utilizing only 18 ACSFs to achieve a balance between accuracy and computational efficiency. The framework is validated using the grid searching method, demonstrating that ACSFs selected with our framework are in the optimal region. Furthermore, we also compared our method with commonly used feature selection algorithms. The results show that our algorithm outperforms the others in terms of effectiveness and accuracy. This study highlights the significance of the ACSF parameter effect on the ANN performance and presents a promising method for automatic ACSF selection, facilitating the development of machine learning potentials.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2024-11-19
DOI
https://doi.org/10.1021/acs.jctc.4c01176
Citations
1
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.12

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article

Automatic Feature Selection for Atom-Centered Neural Network Potentials Using a Gradient Boosting Decision Algorithm

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Journal of Chemical Theory and Computation
Machine Learning in Materials Science
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article

Automatic Feature Selection for Atom-Centered Neural Network Potentials Using a Gradient Boosting Decision Algorithm

Akksay Singh, Renzhe Li, Chuan Zhou, Zichen Song, Jiaqi Wang, Lei Li, Bai Li
article en
1 citations

Abstract

Atom-centered neural network (ANN) potentials have shown high accuracy and computational efficiency in modeling atomic systems. A crucial step in developing reliable ANN potentials is the proper selection of atom-centered symmetry functions (ACSFs), also known as atomic features, to describe atomic environments. Inappropriate selection of ACSFs can lead to poor-quality ANN potentials. Here, we propose a gradient boosting decision tree (GBDT)-based framework for the automatic selection of optimal ACSFs. This framework takes uniformly distributed sets of ACSFs as input and evaluates their relative importance. The ACSFs with high average importance scores are selected and used to train an ANN potential. We applied this method to the Ge system, resulting in an ANN potential with root-mean-square errors (RMSE) of 10.2 meV/atom for energy and 84.8 meV/Å for force predictions, utilizing only 18 ACSFs to achieve a balance between accuracy and computational efficiency. The framework is validated using the grid searching method, demonstrating that ACSFs selected with our framework are in the optimal region. Furthermore, we also compared our method with commonly used feature selection algorithms. The results show that our algorithm outperforms the others in terms of effectiveness and accuracy. This study highlights the significance of the ACSF parameter effect on the ANN performance and presents a promising method for automatic ACSF selection, facilitating the development of machine learning potentials.

Journal of Chemical Theory and ComputationVol. 20(23)
City University of Hong Kong (HK), Southern University of Science and Technology (CN), The University of Texas at Austin (US)
National Natural Science Foundation of China, Department of Education of Guangdong Province, Shenzhen Fundamental Research Program, National Key Research and Development Program of China
Openalex Percentile: Top 58%
Machine Learning in Materials Science
0.12
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