Phylogenetic relationships of Neogene hamsters (Mammalia, Rodentia, Cricetinae) revealed under Bayesian inference and maximum parsimony

There is an ongoing debate about the internal systematics of today's group of hamsters (Cricetinae), following new insights that are gained based on molecular data. Regarding the closely related fossil cricetids, however, most studies deal with only a limited number of genera and statements about their possible relationships are rare. In this study, 41 fossil species from the Late Miocene to the Pliocene, belonging to seven extinct cricetine genera, <i>Collimys</i>, <i>Rotundomys</i>, <i>Neocricetodon</i>, <i>Pseudocricetus</i>, <i>Cricetulodon</i>, <i>Apocricetus</i> and <i>Hattomys</i> are analysed in a phylogenetic framework using traditional maximum parsimony and Bayesian inference approaches. Following thorough model testing, a relaxed-clock Bayesian inference analysis is performed under tip-dating to estimate divergence times simultaneously. Furthermore, so-called 'rogue' taxa are identified and excluded from the final trees to improve the informative value of the shown relationships. Based on these resulting trees, the fit of the topologies to the stratigraphy is assessed and the ancestral states of the characters are reconstructed under a parsimonious approach and stochastic character mapping. The overall topologies resulting from Bayesian and parsimonious approaches are largely congruent to each other and confirm the monophyly of most of the genera. Additionally, synapomorphies can be identified for each of these genera based on the ancestral state reconstructions. Only <i>Cricetulodon</i> turns out to be paraphyletic, while '<i>Cricetulodon</i>' <i>complicidens</i> is a member of <i>Neocricetodon</i>. Lastly, this work makes a contribution to a debate that went on for decades, as the genus <i>Kowalskia</i> can be confirmed as junior synonym of <i>Neocricetodon</i>.

Authors

Institutions

Publication Details

Journal
PeerJ
Published
2024-11-15
DOI
https://doi.org/10.7717/peerj.18440
Citations
1
Primary Topic
Evolution and Paleontology Studies
Type
article
Field-Weighted Citation Impact
1.59

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Phylogenetic relationships of Neogene hamsters (Mammalia, Rodentia, Cricetinae) revealed under Bayesian inference and maximum parsimony

Raquel López‐Antoñanzas, Pablo Peláez‐Campomanes, Moritz Dirnberger
1 citations
PeerJ
Evolution and Paleontology Studies
1.59
article

Phylogenetic relationships of Neogene hamsters (Mammalia, Rodentia, Cricetinae) revealed under Bayesian inference and maximum parsimony

Raquel López‐Antoñanzas, Pablo Peláez‐Campomanes, Moritz Dirnberger
article en
1 citations

Abstract

There is an ongoing debate about the internal systematics of today's group of hamsters (Cricetinae), following new insights that are gained based on molecular data. Regarding the closely related fossil cricetids, however, most studies deal with only a limited number of genera and statements about their possible relationships are rare. In this study, 41 fossil species from the Late Miocene to the Pliocene, belonging to seven extinct cricetine genera, <i>Collimys</i>, <i>Rotundomys</i>, <i>Neocricetodon</i>, <i>Pseudocricetus</i>, <i>Cricetulodon</i>, <i>Apocricetus</i> and <i>Hattomys</i> are analysed in a phylogenetic framework using traditional maximum parsimony and Bayesian inference approaches. Following thorough model testing, a relaxed-clock Bayesian inference analysis is performed under tip-dating to estimate divergence times simultaneously. Furthermore, so-called 'rogue' taxa are identified and excluded from the final trees to improve the informative value of the shown relationships. Based on these resulting trees, the fit of the topologies to the stratigraphy is assessed and the ancestral states of the characters are reconstructed under a parsimonious approach and stochastic character mapping. The overall topologies resulting from Bayesian and parsimonious approaches are largely congruent to each other and confirm the monophyly of most of the genera. Additionally, synapomorphies can be identified for each of these genera based on the ancestral state reconstructions. Only <i>Cricetulodon</i> turns out to be paraphyletic, while '<i>Cricetulodon</i>' <i>complicidens</i> is a member of <i>Neocricetodon</i>. Lastly, this work makes a contribution to a debate that went on for decades, as the genus <i>Kowalskia</i> can be confirmed as junior synonym of <i>Neocricetodon</i>.

PeerJVol. 12
Centre National de la Recherche Scientifique (FR), Université de Montpellier (FR), Institut des Sciences de l'Evolution de Montpellier (FR), Museo Nacional de Ciencias Naturales (ES), Institut de Recherche pour le Développement (FR)
Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation, Ministerio de Ciencia, Innovación y Universidades, Agence Nationale de la Recherche, Université de Montpellier, Agencia Estatal de Investigación
Openalex Percentile: Top 11%
Evolution and Paleontology Studies
1.59
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.