Deep learning-driven macroscopic AI segmentation model for brain tumor detection via digital pathology: Foundations for terahertz imaging-based AI diagnostics

We used deep learning methods to develop an AI model capable of autonomously delineating cancerous regions in digital pathology images (H&E-stained images). By using a transgenic brain tumor model derived from the TS13-64 brain tumor cell line, we digitized a total of 187 H&E-stained images and annotated the cancerous regions in these images to compile a dataset. A deep learning approach was executed through DEEP:PHI, which abstracts Python coding complexities, thereby simplifying the execution of AI training protocols for users. By employing the Image Crop with Mask technique and patch generation method, we not only maintained an appropriate data class balance but also overcame the challenge of limited computing resources. This approach enabled us to successfully develop an AI training model that autonomously segments cancerous areas. This AI model enables the provision of guiding images for determining cancerous areas with minimal assistance from neuropathologists. In addition, the high-quality, large dataset curated for training using the proposed approach contributes to the development of novel terahertz imaging-based AI cancer diagnosis technologies and accelerates technological advancements.

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Publication Details

Journal
Heliyon
Published
2024-11-01
DOI
https://doi.org/10.1016/j.heliyon.2024.e40452
Citations
7
Primary Topic
Brain Tumor Detection and Classification
Type
article
Field-Weighted Citation Impact
1.73

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article

Deep learning-driven macroscopic AI segmentation model for brain tumor detection via digital pathology: Foundations for terahertz imaging-based AI diagnostics

Seunghwan Jung, Jong Hee Chang, Hyun Ju Choi, Woon-Ha Yeo et al.
7 citations
Heliyon
Brain Tumor Detection and Classification
1.73
article

Deep learning-driven macroscopic AI segmentation model for brain tumor detection via digital pathology: Foundations for terahertz imaging-based AI diagnostics

Seunghwan Jung, Jong Hee Chang, Hyun Ju Choi, Woon-Ha Yeo, Hyeon Sang Bark, Jang-Woo Kwon, Han‐Cheol Ryu, Seung Jae Oh, Byeong Cheol Yoo, Seok‐Gu Kang, Inhee Maeng, Jungsup Byun, Y. H. Kim, Se Hoon Kim, Jin‐Kyoung Shim, Myeong Suk Yim, Young Bin Ji
article en
7 citations

Abstract

We used deep learning methods to develop an AI model capable of autonomously delineating cancerous regions in digital pathology images (H&E-stained images). By using a transgenic brain tumor model derived from the TS13-64 brain tumor cell line, we digitized a total of 187 H&E-stained images and annotated the cancerous regions in these images to compile a dataset. A deep learning approach was executed through DEEP:PHI, which abstracts Python coding complexities, thereby simplifying the execution of AI training protocols for users. By employing the Image Crop with Mask technique and patch generation method, we not only maintained an appropriate data class balance but also overcame the challenge of limited computing resources. This approach enabled us to successfully develop an AI training model that autonomously segments cancerous areas. This AI model enables the provision of guiding images for determining cancerous areas with minimal assistance from neuropathologists. In addition, the high-quality, large dataset curated for training using the proposed approach contributes to the development of novel terahertz imaging-based AI cancer diagnosis technologies and accelerates technological advancements.

HeliyonVol. 10(22)
Inje University (KR), Yonsei University (KR), Nexen (Canada) (CA), Sahmyook University (KR), Severance Hospital (KR), Gwangju Institute of Science and Technology (KR), Yonsei University Health System (KR)
Gwangju Institute of Science and Technology, Chungnam National University Hospital, Ministry of Science and ICT, South Korea, Institute for Information and Communications Technology Promotion
Openalex Percentile: Top 15%
Brain Tumor Detection and Classification
1.73
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