Comparison of Universal mtDNA Primers in Species Identification of Animals in a Sample with Severely Degraded DNA

Analysis of mitochondrial DNA, specifically the cytochrome b gene (cyt b), has become an essential tool for species identification. In the case of degraded samples, in which DNA is fractionated, universal primers, which are highly effective at amplifying the target region, are necessary. The material analysed in this study was a keychain made of bone, which was secured at a border crossing due to the suspicion that it was made of ivory. Due to processing of the bone and the likelihood of DNA degradation, five pairs of universal primers with different product lengths (from 148 to 990 base pairs) were used for species identification. Fragments of mtDNA from the cyt b and the 12S rRNA and 16S rRNA subunits were analysed. The analysis showed that only one pair of primers (L15601/H15748) enabled identification of the species, which is very common in samples with highly degraded DNA. The material was bone tissue belonging to the species <i>Bos taurus</i> (cattle). Species identification by molecular methods is extremely important in analysis of material when the species cannot be identified on the basis of morphological characteristics.

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Publication Details

Journal
Animals
Published
2024-11-13
DOI
https://doi.org/10.3390/ani14223256
Citations
3
Primary Topic
Identification and Quantification in Food
Type
article
Field-Weighted Citation Impact
0.70
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article

Comparison of Universal mtDNA Primers in Species Identification of Animals in a Sample with Severely Degraded DNA

Magdalena Gryzińska, Aleksandra Figura, A. Jakubczak
3 citations
Animals
Identification and Quantification in Food
0.70
article

Comparison of Universal mtDNA Primers in Species Identification of Animals in a Sample with Severely Degraded DNA

Magdalena Gryzińska, Aleksandra Figura, A. Jakubczak
article en
3 citations

Abstract

Analysis of mitochondrial DNA, specifically the cytochrome b gene (cyt b), has become an essential tool for species identification. In the case of degraded samples, in which DNA is fractionated, universal primers, which are highly effective at amplifying the target region, are necessary. The material analysed in this study was a keychain made of bone, which was secured at a border crossing due to the suspicion that it was made of ivory. Due to processing of the bone and the likelihood of DNA degradation, five pairs of universal primers with different product lengths (from 148 to 990 base pairs) were used for species identification. Fragments of mtDNA from the cyt b and the 12S rRNA and 16S rRNA subunits were analysed. The analysis showed that only one pair of primers (L15601/H15748) enabled identification of the species, which is very common in samples with highly degraded DNA. The material was bone tissue belonging to the species <i>Bos taurus</i> (cattle). Species identification by molecular methods is extremely important in analysis of material when the species cannot be identified on the basis of morphological characteristics.

AnimalsVol. 14(22)
University of Life Sciences in Lublin (PL)
Openalex Percentile: Top 29%
Identification and Quantification in Food
0.70
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Comparison of Universal mtDNA Primers in Species Identification of Animals in a Sample with Severely Degraded DNA — Magdalena Gryzińska, Aleksandra Figura, et al. · Animals (2024) | TGRS Research Map | TGRS