Phylogenetic analysis of the complete mitochondrial genome of the orange-winged sulphur butterfly <i>Dercas nina</i> Mell 1913 (Insecta: Lepidoptera: Pieridae: Coliadinae)

<i>Dercas nina</i> Mell 1913 (Pieridae) is a little-studied butterfly species endemic to China that flies primarily in the forest canopy. Genome skimming by Illumina sequencing allowed assembly of 146,702 reads for complete 1471.3-fold mean coverage of the circular 15,264 bp mitogenome from <i>D. nina</i> consisting of 82.1% AT nucleotides. A gene order typical of butterflies was recovered consisting of 13 protein-coding genes, 22 tRNAs, two rRNAs, and a predicted control region. The <i>Dercas nina COX1</i> open reading frame begins with atypical start codon CGA. Six protein-coding genes (<i>COX1</i>, <i>COX2</i>, <i>ND2</i>, <i>ND3</i>, <i>ND4</i>, <i>ND5</i>) with single-nucleotide (T) stop codons, and two protein-coding genes (<i>ATP6</i>, <i>ATP8</i>) with two-nucleotide (TA) stop codons encoded in the DNA were inferred to be completed by adenine nucleotides from the Poly-A tail of the mRNA. Bayesian's phylogenetic reconstruction places the <i>D. nina</i> and <i>D. lycorias</i> mitogenomes as sister clades. <i>Dercas</i> mitogenomes were sister to those from genus <i>Colias</i> in the monophyletic subfamily Coliadinae. The mitogenome phylogeny is consistent with previous molecular phylogenetic hypotheses based on other markers, but differs somewhat from a morphology-based hypothesis that suggested that <i>Dercas</i> was more closely related to genus <i>Gonepteryx</i>. This may falsify the hypothesis or may instead reflect mitochondrial-nuclear phylogenetic discordance.

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Journal
Mitochondrial DNA Part B
Published
2024-11-13
DOI
https://doi.org/10.1080/23802359.2024.2427109
Citations
2
Primary Topic
Lepidoptera: Biology and Taxonomy
Type
article
Field-Weighted Citation Impact
1.10

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article

Phylogenetic analysis of the complete mitochondrial genome of the orange-winged sulphur butterfly Dercas nina Mell 1913 (Insecta: Lepidoptera: Pieridae: Coliadinae)

DA Peters, Laurie J. McEachern, Oleksandra Fedorova, Jeffrey M. Marcus et al.
2 citations
Mitochondrial DNA Part B
Lepidoptera: Biology and Taxonomy
1.10
article

Phylogenetic analysis of the complete mitochondrial genome of the orange-winged sulphur butterfly Dercas nina Mell 1913 (Insecta: Lepidoptera: Pieridae: Coliadinae)

DA Peters, Laurie J. McEachern, Oleksandra Fedorova, Jeffrey M. Marcus, Cassidy McNeill, Geonwoo Park, Pratyaksh Singhal, Manik Chahal, Cora Stoker, Arnold Kozak, Graham David, Ashley Tohms, Feryal Ladha, Yu Ke, Yi Tan, Kaesy Lynne Enns, Camille Préfontaine, Alexandria Martin, C. A. T. Yee, N. Nguyen, J. Tang, James Potts, Arlene M. Agcaoili, Hannah A. Garber, Sarah D. Gregoire, Tenley E. Ilnisky, Annie Jiang, Mary A. McAuley, Nabiha Ameena, Senudi D. Nanayakkara, Madison N. Poitras, Dhruvi V. Prajapati, Ravindu V. Rajapaksha, Dexter Andres, Cedey Souriyavong, Kayla R. Talabis, Kailey W. Tkach, Cameron G. Tramley, Josh Treftlin, Diya Ukani, Rhey Caners, Ethan A. Vallelly, Patrick V. Wiens, Nicole J. Croitor
article en
2 citations

Abstract

<i>Dercas nina</i> Mell 1913 (Pieridae) is a little-studied butterfly species endemic to China that flies primarily in the forest canopy. Genome skimming by Illumina sequencing allowed assembly of 146,702 reads for complete 1471.3-fold mean coverage of the circular 15,264 bp mitogenome from <i>D. nina</i> consisting of 82.1% AT nucleotides. A gene order typical of butterflies was recovered consisting of 13 protein-coding genes, 22 tRNAs, two rRNAs, and a predicted control region. The <i>Dercas nina COX1</i> open reading frame begins with atypical start codon CGA. Six protein-coding genes (<i>COX1</i>, <i>COX2</i>, <i>ND2</i>, <i>ND3</i>, <i>ND4</i>, <i>ND5</i>) with single-nucleotide (T) stop codons, and two protein-coding genes (<i>ATP6</i>, <i>ATP8</i>) with two-nucleotide (TA) stop codons encoded in the DNA were inferred to be completed by adenine nucleotides from the Poly-A tail of the mRNA. Bayesian's phylogenetic reconstruction places the <i>D. nina</i> and <i>D. lycorias</i> mitogenomes as sister clades. <i>Dercas</i> mitogenomes were sister to those from genus <i>Colias</i> in the monophyletic subfamily Coliadinae. The mitogenome phylogeny is consistent with previous molecular phylogenetic hypotheses based on other markers, but differs somewhat from a morphology-based hypothesis that suggested that <i>Dercas</i> was more closely related to genus <i>Gonepteryx</i>. This may falsify the hypothesis or may instead reflect mitochondrial-nuclear phylogenetic discordance.

Mitochondrial DNA Part BVol. 9(11)
University of Manitoba (CA)
Natural Sciences and Engineering Research Council of Canada
Openalex Percentile: Top 18%
Lepidoptera: Biology and Taxonomy
1.10
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