Synergistic Modeling of Liquid Properties: Integrating Neural Network-Derived Molecular Features with Modified Kernel Models

A significant challenge in applying machine learning to computational chemistry, particularly considering the growing complexity of contemporary machine learning models, is the scarcity of available experimental data. To address this issue, we introduce an approach that derives molecular features from an intricate neural network-based model and applies them to a simpler conventional machine learning model that is robust to overfitting. This method can be applied to predict various properties of a liquid system, including viscosity or surface tension, based on molecular features drawn from the <i>ab initio</i> calculated free energy of solvation. Furthermore, we propose a modified kernel model that includes Arrhenius temperature dependence to incorporate theoretical principles and diminish extreme nonlinearity in the model. The modified kernel model demonstrated significant improvements in certain scenarios and possible extensions to various theoretical concepts of molecular systems.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2024-11-13
DOI
https://doi.org/10.1021/acs.jctc.4c00961
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
0.00

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article

Synergistic Modeling of Liquid Properties: Integrating Neural Network-Derived Molecular Features with Modified Kernel Models

YounJoon Jung, Hyuntae Lim
Journal of Chemical Theory and Computation
Computational Drug Discovery Methods
article

Synergistic Modeling of Liquid Properties: Integrating Neural Network-Derived Molecular Features with Modified Kernel Models

YounJoon Jung, Hyuntae Lim
article en

Abstract

A significant challenge in applying machine learning to computational chemistry, particularly considering the growing complexity of contemporary machine learning models, is the scarcity of available experimental data. To address this issue, we introduce an approach that derives molecular features from an intricate neural network-based model and applies them to a simpler conventional machine learning model that is robust to overfitting. This method can be applied to predict various properties of a liquid system, including viscosity or surface tension, based on molecular features drawn from the <i>ab initio</i> calculated free energy of solvation. Furthermore, we propose a modified kernel model that includes Arrhenius temperature dependence to incorporate theoretical principles and diminish extreme nonlinearity in the model. The modified kernel model demonstrated significant improvements in certain scenarios and possible extensions to various theoretical concepts of molecular systems.

Journal of Chemical Theory and ComputationVol. 20(22)
Seoul National University (KR)
National Research Foundation of Korea
Openalex Percentile: Top 76%
Computational Drug Discovery Methods
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