Fast and Functional Structured Data Generators Rooted in Out-of-Equilibrium Physics
In this study, we address the challenge of using energy-based models to produce high-quality, label-specific data in complex structured datasets, such as population genetics, RNA or protein sequences data. Traditional training methods encounter difficulties due to inefficient Markov chain Monte Carlo mixing, which affects the diversity of synthetic data and increases generation times. To address these issues, we use a novel training algorithm that exploits non-equilibrium effects. This approach, applied to the Restricted Boltzmann Machine, improves the model's ability to correctly classify samples and generate high-quality synthetic data in only a few sampling steps. The effectiveness of this method is demonstrated by its successful application to five different types of data: handwritten digits, mutations of human genomes classified by continental origin, functionally characterized sequences of an enzyme protein family, homologous RNA sequences from specific taxonomies and real classical piano pieces classified by their composer.
Authors
- Beatriz Seoane (ORCID: https://orcid.org/0000-0003-4007-9406)
- Alessandra Carbone (ORCID: https://orcid.org/0000-0003-2098-5743)
- Aurélien Decelle (ORCID: https://orcid.org/0000-0002-3017-0858)
- Lorenzo Rosset (ORCID: https://orcid.org/0000-0001-6122-5252)
Institutions
- Universidad Complutense de Madrid (ES)
- Centre National de la Recherche Scientifique (FR)
- Sorbonne Université (FR)
- Biologie Computationnelle, Quantitative et Synthétique (FR)
Publication Details
- Journal
- IEEE Transactions on Pattern Analysis and Machine Intelligence
- Published
- 2024-11-11
- DOI
- https://doi.org/10.1109/tpami.2024.3495999
- Citations
- 6
- Primary Topic
- Protein Structure and Dynamics
- Type
- article
- Field-Weighted Citation Impact
- 1.40
Funders
- Banco Santander