Expression levels of some genes in the MAPK pathway ( <i>DUSP1</i> , <i>DUSP2</i> , <i>DUSP4</i> , <i>DUSP6</i> and <i>DUSP10</i> ) in eyelid tumor tissue

Abstract Objectives To control mitogen-activated protein kinases (MAPK) signaling pathways involved in the onset and progression of cancer, dual specificity phosphatases ( DUSPs /MKP) are essential. This study seeks to detect the correlation between eyelid tumors and the genes DUSPs , known for their influence on MAPK signaling pathways. Additionally, we aim to juxtapose our findings with analyses from various bioinformatics databases. Methods Expression levels of relevant genes in cDNA samples were determined by quantitative PCR method. Open-access databases were used for mutation analysis of relevant genes, mRNA expression changes, and survival analyses, and the STRING database was used for protein-protein interactions. Results It was found that the expression of DUSP1 and DUSP2 showed a significant decrease in the tumor tissue, while a significant increase was detected in the DUSP4 and DUSP6 genes. Additionally, when we compared the study genes with the Cancer Genome Atlas program cancer cohorts, it was found that the DUSP1 and DUSP10 gene expression profiles were downregulated in uveal melanoma compared to other cancer cohorts. Conclusions Significant and obvious changes were observed in the DUSP genes we studied in eyelid tumors. However, the relationship between these genes and cancer must be studied more. Considering that these enzymes are effective in cell proliferation, differentiation, and apoptosis, it would be appropriate to plan comprehensive studies on their interactions with other proteins they interact with in the MAPK pathway.

Authors

Institutions

Publication Details

Journal
Turkish Journal of Biochemistry
Published
2024-11-11
DOI
https://doi.org/10.1515/tjb-2023-0279
Primary Topic
Protein Tyrosine Phosphatases
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Expression levels of some genes in the MAPK pathway ( DUSP1 , DUSP2 , DUSP4 , DUSP6 and DUSP10 ) in eyelid tumor tissue

Esma Özmen, Dilara Fatma Akın, Haydar Erdoğan, Ayça Taş et al.
Turkish Journal of Biochemistry
Protein Tyrosine Phosphatases
article

Expression levels of some genes in the MAPK pathway ( DUSP1 , DUSP2 , DUSP4 , DUSP6 and DUSP10 ) in eyelid tumor tissue

Esma Özmen, Dilara Fatma Akın, Haydar Erdoğan, Ayça Taş, Yavuz Siliğ
article en

Abstract

Abstract Objectives To control mitogen-activated protein kinases (MAPK) signaling pathways involved in the onset and progression of cancer, dual specificity phosphatases ( DUSPs /MKP) are essential. This study seeks to detect the correlation between eyelid tumors and the genes DUSPs , known for their influence on MAPK signaling pathways. Additionally, we aim to juxtapose our findings with analyses from various bioinformatics databases. Methods Expression levels of relevant genes in cDNA samples were determined by quantitative PCR method. Open-access databases were used for mutation analysis of relevant genes, mRNA expression changes, and survival analyses, and the STRING database was used for protein-protein interactions. Results It was found that the expression of DUSP1 and DUSP2 showed a significant decrease in the tumor tissue, while a significant increase was detected in the DUSP4 and DUSP6 genes. Additionally, when we compared the study genes with the Cancer Genome Atlas program cancer cohorts, it was found that the DUSP1 and DUSP10 gene expression profiles were downregulated in uveal melanoma compared to other cancer cohorts. Conclusions Significant and obvious changes were observed in the DUSP genes we studied in eyelid tumors. However, the relationship between these genes and cancer must be studied more. Considering that these enzymes are effective in cell proliferation, differentiation, and apoptosis, it would be appropriate to plan comprehensive studies on their interactions with other proteins they interact with in the MAPK pathway.

Turkish Journal of BiochemistryVol. 49(6)
Sivas Cumhuriyet Üniversitesi (TR), Niğde Ömer Halisdemir Üniversitesi (TR)
Sivas Cumhuriyet Üniversitesi
Good health and well-being
Openalex Percentile: Top 82%
Protein Tyrosine Phosphatases
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.