Symmetry and Complexity in Gene Association Networks Using the Generalized Correlation Coefficient

High-dimensional gene expression data cause challenges for traditional statistical tools, particularly when dealing with non-linear relationships and outliers. The present study addresses these challenges by employing a generalized correlation coefficient (GCC) that incorporates a flexibility parameter, allowing it to adapt to varying levels of symmetry and asymmetry in the data distribution. This adaptability is crucial for analyzing gene association networks, where the GCC demonstrates advantages over traditional measures such as Kendall, Pearson, and Spearman coefficients. We introduce two novel adaptations of this metric, enhancing its precision and broadening its applicability in the context of complex gene interactions. By applying the GCC to relevance networks, we show how different levels of the flexibility parameter reveal distinct patterns in gene interactions, capturing both linear and non-linear relationships. The maximum likelihood and Spearman-based estimators of the GCC offer a refined approach for disentangling the complexity of biological networks, with potential implications for precision medicine. Our methodology provides a powerful tool for constructing and interpreting relevance networks in biomedicine, supporting advancements in the understanding of biological interactions and healthcare research.

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Publication Details

Journal
Symmetry
Published
2024-11-11
DOI
https://doi.org/10.3390/sym16111510
Primary Topic
Bioinformatics and Genomic Networks
Type
article
Field-Weighted Citation Impact
0.00

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article

Symmetry and Complexity in Gene Association Networks Using the Generalized Correlation Coefficient

Víctor Leiva, Patrícia L. Espinheira, Raydonal Ospina, Cecília Castro et al.
Symmetry
Bioinformatics and Genomic Networks
article

Symmetry and Complexity in Gene Association Networks Using the Generalized Correlation Coefficient

Víctor Leiva, Patrícia L. Espinheira, Raydonal Ospina, Cecília Castro, Cleber Xavier, Gustavo Henrique Esteves
article en

Abstract

High-dimensional gene expression data cause challenges for traditional statistical tools, particularly when dealing with non-linear relationships and outliers. The present study addresses these challenges by employing a generalized correlation coefficient (GCC) that incorporates a flexibility parameter, allowing it to adapt to varying levels of symmetry and asymmetry in the data distribution. This adaptability is crucial for analyzing gene association networks, where the GCC demonstrates advantages over traditional measures such as Kendall, Pearson, and Spearman coefficients. We introduce two novel adaptations of this metric, enhancing its precision and broadening its applicability in the context of complex gene interactions. By applying the GCC to relevance networks, we show how different levels of the flexibility parameter reveal distinct patterns in gene interactions, capturing both linear and non-linear relationships. The maximum likelihood and Spearman-based estimators of the GCC offer a refined approach for disentangling the complexity of biological networks, with potential implications for precision medicine. Our methodology provides a powerful tool for constructing and interpreting relevance networks in biomedicine, supporting advancements in the understanding of biological interactions and healthcare research.

SymmetryVol. 16(11)
Universidade Federal da Bahia (BR), Pontificia Universidad Católica de Valparaíso (CL), Universidade Estadual da Paraíba (BR), Universidade Federal de Sergipe (BR), Universidade Federal de Pernambuco (BR), University of Minho (PT)
Agenția Națională pentru Cercetare și Dezvoltare, Conselho Nacional de Desenvolvimento Científico e Tecnológico, Fundação de Amparo à Pesquisa do Estado da Bahia, Pontificia Universidad Católica de Valparaíso, Universidade do Minho, Agencia Nacional de Investigación y Desarrollo, CHIST-ERA
Openalex Percentile: Top 82%
Bioinformatics and Genomic Networks
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