New record of Carnidae (Diptera) from Taiwan and potential challenges in DNA barcode amplification due to pseudogene

The following new information regarding <i>C.orientalis</i> is provided in this study: <i>Carnusorientalis</i> is first recorded in Taiwan, filling the gap in its East Asian distribution. This is also the first record of Carnidae from Taiwan.<i>Otuslettia</i> (Hodgson, 1836) (Aves, Strigidae) is reported as a new host for <i>C.orientalis</i>, identified on a fallen fledgling.Co-amplification of the host's <i>COI</i> is reported in this study using the universal PCR primer set LCO1490/HCO2198. Additionally, the amplification of a <i>COI</i>-like pseudogene using a newly-designed primer set is detected through abnormal translated amino acid sequences and the occurrence of a stop codon.New specific primers for the <i>COI</i> gene of <i>Carnus</i> were designed in this study. The new distribution and ecological data of <i>C.orientalis</i> enhance our understanding of this species. The provision of new <i>COI</i> primers is anticipated to contribute to future studies employing DNA barcoding in bird-parasitic flies.

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Publication Details

Journal
Biodiversity Data Journal
Published
2024-11-08
DOI
https://doi.org/10.3897/bdj.12.e137532
Citations
1
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
0.46

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article

New record of Carnidae (Diptera) from Taiwan and potential challenges in DNA barcode amplification due to pseudogene

Ming‐Chung Chiu, Hsuan-Pu Chen, Shiuh‐Feng Shiao, Fang-Tse Chan
1 citations
Biodiversity Data Journal
Environmental DNA in Biodiversity Studies
0.46
article

New record of Carnidae (Diptera) from Taiwan and potential challenges in DNA barcode amplification due to pseudogene

Ming‐Chung Chiu, Hsuan-Pu Chen, Shiuh‐Feng Shiao, Fang-Tse Chan
article en
1 citations

Abstract

The following new information regarding <i>C.orientalis</i> is provided in this study: <i>Carnusorientalis</i> is first recorded in Taiwan, filling the gap in its East Asian distribution. This is also the first record of Carnidae from Taiwan.<i>Otuslettia</i> (Hodgson, 1836) (Aves, Strigidae) is reported as a new host for <i>C.orientalis</i>, identified on a fallen fledgling.Co-amplification of the host's <i>COI</i> is reported in this study using the universal PCR primer set LCO1490/HCO2198. Additionally, the amplification of a <i>COI</i>-like pseudogene using a newly-designed primer set is detected through abnormal translated amino acid sequences and the occurrence of a stop codon.New specific primers for the <i>COI</i> gene of <i>Carnus</i> were designed in this study. The new distribution and ecological data of <i>C.orientalis</i> enhance our understanding of this species. The provision of new <i>COI</i> primers is anticipated to contribute to future studies employing DNA barcoding in bird-parasitic flies.

Biodiversity Data JournalVol. 12
National Taiwan University (TW), Biodiversity Research Center, Academia Sinica (TW), National Taipei University (TW)
National Science and Technology Council
Openalex Percentile: Top 28%
Environmental DNA in Biodiversity Studies
0.46
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