Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all

The pathway for synthesis of proline in most forms of life produces a highly unstable intermediate, γ-L-glutamyl 5-phosphate (GP). For nearly 70 y, channeling of this intermediate from the active site of glutamate 5-kinase to the active site of GP reductase has been believed to protect GP from cyclization to a dead-end product. However, the evidence presented in support of this idea is not conclusive. We show that changes in the structures of the kinase or reductase that should preclude a protein-protein interaction do not compromise proline synthesis in <i>Escherichia coli</i>, demonstrating that channeling does not occur. We calculate that the half-life of GP is 320 ms. Although GP is indeed unstable, it should diffuse the length of an <i>E. coli</i> cell in less than 3 ms. Thus, most GP produced by glutamate 5-kinase should encounter the active site of GP reductase before cyclization occurs.

Authors

Institutions

Publication Details

Journal
Proceedings of the National Academy of Sciences
Published
2024-11-08
DOI
https://doi.org/10.1073/pnas.2413673121
Primary Topic
Enzyme Structure and Function
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all

Andrew B. Morgenthaler, Shelley D. Copley, Matilda Newton, Ashley L. Azadeh
Proceedings of the National Academy of Sciences
Enzyme Structure and Function
article

Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all

Andrew B. Morgenthaler, Shelley D. Copley, Matilda Newton, Ashley L. Azadeh
article en

Abstract

The pathway for synthesis of proline in most forms of life produces a highly unstable intermediate, γ-L-glutamyl 5-phosphate (GP). For nearly 70 y, channeling of this intermediate from the active site of glutamate 5-kinase to the active site of GP reductase has been believed to protect GP from cyclization to a dead-end product. However, the evidence presented in support of this idea is not conclusive. We show that changes in the structures of the kinase or reductase that should preclude a protein-protein interaction do not compromise proline synthesis in <i>Escherichia coli</i>, demonstrating that channeling does not occur. We calculate that the half-life of GP is 320 ms. Although GP is indeed unstable, it should diffuse the length of an <i>E. coli</i> cell in less than 3 ms. Thus, most GP produced by glutamate 5-kinase should encounter the active site of GP reductase before cyclization occurs.

Proceedings of the National Academy of SciencesVol. 121(46)
Cooperative Institute for Research in Environmental Sciences (US), University of Colorado Boulder (US), Royal Society Te Apārangi (NZ), Amyris (United States) (US)
National Aeronautics and Space Administration, Cooperative Institute for Research in Environmental Sciences, National Institute of General Medical Sciences
Openalex Percentile: Top 88%
Enzyme Structure and Function
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.