Data-Based Prediction of Redox Potentials via Introducing Chemical Features into the Transformer Architecture
Rapid and accurate prediction of basic physicochemical parameters of molecules will greatly accelerate the target-orientated design of novel reactions and materials but has been long challenging. Herein, a chemical language model-based deep learning method, TransChem, has been developed for the prediction of redox potentials of organic molecules. Embedding an effective molecular characterization (combining spatial and electronic features), a nonlinear molecular messaging approach (Mol-Attention), and a perturbation learning method, TransChem, shows high accuracy in predicting the redox potential of organic radicals comprising over 100,000 data (<i>R</i><sup>2</sup> > 0.97, MAE <0.09 V) and is generalized to the smaller 2,1,3-benzothiadiazole data set (<3000 data points) and electron affinity data set (660 data) with low MAE of 0.07 V and 0.18 eV, respectively. In this context, a self-developed data set, i.e., the oxidation potential (OP) of a full-space disubstituted phenol data set (OPP-data set, total set: 74,529), has been predicted by TransChem with a high-throughput, and active learning strategy. The rapid and reliable prediction of OP could hopefully accelerate the screening of plausible reagents in highly selective cross-coupling of phenol derivatives. This study presents an important attempt to guide language modeling with chemical knowledge, while TransChem demonstrates state-of-the-art (SOTA) predictive performance on redox potential prediction benchmark data sets for its better understanding of molecular design and conformational relationships.
Authors
- Deguang Liu (ORCID: https://orcid.org/0000-0003-1249-7280)
- Haizhu Yu (ORCID: https://orcid.org/0000-0001-8259-6466)
- Zhan Si (ORCID: https://orcid.org/0000-0002-4517-3509)
- Wan Nie (ORCID: https://orcid.org/0000-0002-0590-6608)
- Yao Fu (ORCID: https://orcid.org/0000-0003-2282-4839)
- Jingjing Hu (ORCID: https://orcid.org/0000-0002-7008-0320)
- Tingting Jiang (ORCID: https://orcid.org/0000-0003-4561-8288)
- Chen Wang (ORCID: https://orcid.org/0009-0003-2924-3399)
Institutions
- University of Science and Technology of China (CN)
- Anhui University (CN)
- Hefei University of Technology (CN)
- City University of Hong Kong (HK)
- CAS Key Laboratory of Urban Pollutant Conversion (CN)
Publication Details
- Journal
- Journal of Chemical Information and Modeling
- Published
- 2024-11-08
- DOI
- https://doi.org/10.1021/acs.jcim.4c01299
- Citations
- 5
- Primary Topic
- Computational Drug Discovery Methods
- Type
- article
- Field-Weighted Citation Impact
- 1.81
Funders
- National Natural Science Foundation of China
- China Postdoctoral Science Foundation
- Major Science and Technology Projects in Anhui Province