CLASSIFICAÇÃO MULTIVARIADA PARA TRIAGEM CLÍNICA DE COVID-19 POR MEIO DA BIOESPECTROSCOPIA

COVID-19, caused by the SARS-CoV-2 virus, is classified as a systemic disease and is primarily detected by serological and molecular methods that are laboratory-dependent. However, Fourier-transform infrared spectroscopy with attenuated total reflectance (ATR-FTIR) associated with chemometric methods has been studied for clinical screening of various diseases, including COVID-19, as it is a rapid and non-destructive technique that allows molecular-level information acquisition. Thus, the objective of this study was to evaluate different multivariate classification approaches in distinguishing between serum samples from individuals infected with COVID-19 and symptomatic individuals with a negative diagnosis. For this, 167 serum samples from symptomatic patients were used, including 76 negatives and 91 positives (UFES Ethics Committee 51803621.1.0000.5060). ATR-FTIR spectra were collected using a Bruker Alpha II spectrometer (Bruker) in absorbance mode. The data were pre-processed, divided into a training set (n=117) and an external test set (n=50), and evaluated using variable selection and multivariate classification methods (GA-LDA, PLS-DA, and PF-URF). The Fisher-weighted random forest method (PF-RF) demonstrated 85% sensitivity, 73.9% specificity, and 80% accuracy. The variables of interest were predominantly in the regions ~3500 cm-1 to ~3000 cm-1, ~3000 cm-1 to ~2800 cm-1, ~1700 cm-1 to ~1600 cm-1, ~1595 cm-1 to ~1512 cm-1, and ~1196 cm-1 to ~1090 cm-1, assigned to macromolecules of lipids, fatty acids, proteins, carbohydrates, and nucleic acids, respectively. This reinforces the applicability of ATR-FTIR of biofluids associated with multivariate classification for clinical disease screening.

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Publication Details

Journal
Revista Ifes Ciência
Published
2024-10-07
DOI
https://doi.org/10.36524/ric.v10i1.2829
Primary Topic
Spectroscopy Techniques in Biomedical and Chemical Research
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article
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article

CLASSIFICAÇÃO MULTIVARIADA PARA TRIAGEM CLÍNICA DE COVID-19 POR MEIO DA BIOESPECTROSCOPIA

Paulo R. Filgueiras, Valério Garrone Baraúna, Carine Coneglian de Farias, A. M. Torres et al.
Revista Ifes Ciência
Spectroscopy Techniques in Biomedical and Chemical Research
article

CLASSIFICAÇÃO MULTIVARIADA PARA TRIAGEM CLÍNICA DE COVID-19 POR MEIO DA BIOESPECTROSCOPIA

Paulo R. Filgueiras, Valério Garrone Baraúna, Carine Coneglian de Farias, A. M. Torres, Márcia H.C. Nascimento, Lívia Carla de Melo Rodrigues, Wanderson Romão
article en

Abstract

COVID-19, caused by the SARS-CoV-2 virus, is classified as a systemic disease and is primarily detected by serological and molecular methods that are laboratory-dependent. However, Fourier-transform infrared spectroscopy with attenuated total reflectance (ATR-FTIR) associated with chemometric methods has been studied for clinical screening of various diseases, including COVID-19, as it is a rapid and non-destructive technique that allows molecular-level information acquisition. Thus, the objective of this study was to evaluate different multivariate classification approaches in distinguishing between serum samples from individuals infected with COVID-19 and symptomatic individuals with a negative diagnosis. For this, 167 serum samples from symptomatic patients were used, including 76 negatives and 91 positives (UFES Ethics Committee 51803621.1.0000.5060). ATR-FTIR spectra were collected using a Bruker Alpha II spectrometer (Bruker) in absorbance mode. The data were pre-processed, divided into a training set (n=117) and an external test set (n=50), and evaluated using variable selection and multivariate classification methods (GA-LDA, PLS-DA, and PF-URF). The Fisher-weighted random forest method (PF-RF) demonstrated 85% sensitivity, 73.9% specificity, and 80% accuracy. The variables of interest were predominantly in the regions ~3500 cm-1 to ~3000 cm-1, ~3000 cm-1 to ~2800 cm-1, ~1700 cm-1 to ~1600 cm-1, ~1595 cm-1 to ~1512 cm-1, and ~1196 cm-1 to ~1090 cm-1, assigned to macromolecules of lipids, fatty acids, proteins, carbohydrates, and nucleic acids, respectively. This reinforces the applicability of ATR-FTIR of biofluids associated with multivariate classification for clinical disease screening.

Revista Ifes CiênciaVol. 10(1)
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Spectroscopy Techniques in Biomedical and Chemical Research
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