Assessing the de novo assemblers: a metaviromic study of apple and first report of citrus concave gum-associated virus, apple rubbery wood virus 1 and 2 infecting apple in India
Our analyses highlight the crucial role of assembly methods in reconstructing near-complete apple virus genomes from the Illumina reads. This study emphasizes the significance of employing multiple assemblers for de novo virus genome assembly in vegetatively propagated perennial fruit crops.
Authors
- Damini Diksha
- V. K. Baranwal (ORCID: https://orcid.org/0000-0002-5251-0905)
- Susheel Kumar Sharma (ORCID: https://orcid.org/0000-0002-9114-4231)
- Malyaj R. Prajapati (ORCID: https://orcid.org/0000-0002-8542-9732)
- Zainul A. Khan (ORCID: https://orcid.org/0000-0001-8043-2839)
- Nitika Gupta (ORCID: https://orcid.org/0000-0002-9087-1891)
- Pooja Thapa
- Santosh Watpade (ORCID: https://orcid.org/0000-0001-9773-549X)
- Sajad Un Nabi (ORCID: https://orcid.org/0000-0001-6728-8959)
- Mahendra Kumar Verma
- Mailem Yazing Shimray
Institutions
- United States Department of Agriculture (US)
- Central Institute of Temperate Horticulture (IN)
- Edward T. Schafer Agricultural Research Center (US)
- Indian Agricultural Research Institute (IN)
Publication Details
- Journal
- BMC Genomics
- Published
- 2024-11-08
- DOI
- https://doi.org/10.1186/s12864-024-10968-x
- Citations
- 4
- Primary Topic
- Plant Virus Research Studies
- Type
- article
- Field-Weighted Citation Impact
- 2.40
Funders
- Indian Council of Agricultural Research