An INDEL genomic approach to explore population diversity of phytoplankton
This method, which involves (i) pre-identifying the genetic diversity of B. prasinos in environmental samples by PCR, (ii) isolating cells from selected environmental samples and (iii) identifying genotypes representative of B. prasinos diversity for sequencing, can be used to comprehensively describe the diversity and population dynamics not only in B. prasinos but also potentially in other generalist phytoplankton species.
Authors
- Cédric Mariac (ORCID: https://orcid.org/0000-0001-6439-115X)
- Philippe Schatt
- Jean-Claude Lozano
- François-Yves Bouget
- François Sabot (ORCID: https://orcid.org/0000-0002-8522-7583)
- Martine Devic
- Louis Dennu
- Valérie Vergé
Institutions
- Centre National de la Recherche Scientifique (FR)
- Centre de Coopération Internationale en Recherche Agronomique pour le Développement (FR)
- Université de Montpellier (FR)
- Agropolis International (FR)
- Sorbonne Université (FR)
- Diversité, adaptation et développement des plantes (FR)
- Laboratoire d'Océanographie Microbienne (FR)
- Institut de Recherche pour le Développement (FR)
Publication Details
- Journal
- BMC Genomics
- Published
- 2024-11-06
- DOI
- https://doi.org/10.1186/s12864-024-10896-w
- Citations
- 1
- Primary Topic
- Protist diversity and phylogeny
- Type
- article
- Field-Weighted Citation Impact
- 0.23
Funders
- Agence Nationale de la Recherche