Dynamical theory for adaptive systems

Abstract The study of adaptive dynamics, involving many degrees of freedom on two separated timescales, one for fast changes of state variables and another for the slow adaptation of parameters controlling the former’s dynamics is crucial for understanding feedback mechanisms underlying evolution and learning. We present a path-integral approach à la Martin–Siggia–Rose-De Dominicis–Janssen to analyse non-equilibrium phase transitions in such dynamical systems. As an illustration, we apply our framework to the adaptation of gene-regulatory networks under a dynamic genotype-phenotype map: phenotypic variations are shaped by the fast stochastic gene-expression dynamics and are coupled to the slowly evolving distribution of genotypes, each encoded by a network structure. We establish that under this map, genotypes corresponding to reciprocal networks of coherent feedback loops are selected within an intermediate range of environmental noise, leading to phenotypic robustness.

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Publication Details

Journal
Journal of Statistical Mechanics Theory and Experiment
Published
2024-11-06
DOI
https://doi.org/10.1088/1742-5468/ad8223
Citations
7
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
1.64

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article

Dynamical theory for adaptive systems

Tuan Minh Pham, Kunihiko Kaneko
7 citations
Journal of Statistical Mechanics Theory and Experiment
Gene Regulatory Network Analysis
1.64
article

Dynamical theory for adaptive systems

Tuan Minh Pham, Kunihiko Kaneko
article en
7 citations

Abstract

Abstract The study of adaptive dynamics, involving many degrees of freedom on two separated timescales, one for fast changes of state variables and another for the slow adaptation of parameters controlling the former’s dynamics is crucial for understanding feedback mechanisms underlying evolution and learning. We present a path-integral approach à la Martin–Siggia–Rose-De Dominicis–Janssen to analyse non-equilibrium phase transitions in such dynamical systems. As an illustration, we apply our framework to the adaptation of gene-regulatory networks under a dynamic genotype-phenotype map: phenotypic variations are shaped by the fast stochastic gene-expression dynamics and are coupled to the slowly evolving distribution of genotypes, each encoded by a network structure. We establish that under this map, genotypes corresponding to reciprocal networks of coherent feedback loops are selected within an intermediate range of environmental noise, leading to phenotypic robustness.

Journal of Statistical Mechanics Theory and ExperimentVol. 2024(11)
Biocom (US)
Novo Nordisk
Openalex Percentile: Top 16%
Gene Regulatory Network Analysis
1.64
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