Chromosome-level genome assembly of the ivory shell Babylonia areolata

The ivory shell Babylonia areolata is an economically important marine benthic gastropod known for its rapid growth and high nutritional value. B. areolata is distributed in Southeast Asia and the southeast coastal areas of China. In this study, we constructed a high-quality genome for B. areolata using PacBio, Illumina, and Hi-C sequencing technologies. The genome assembly comprised 35 chromosomal sequences with a total length of 1.65 Gb. The scaffold and contig N50 lengths were 53.17 Mb and 2.64 Mb, respectively, with repeat sequences constituting 64.46% of the genome. Furthermore, 26,130 protein-coding genes and 96.75% of the genome's BUSCOs were identified. This inaugural report of a B. areolata genome provides crucial foundational information for further investigations into the biology, genomics, and genetic improvement of economic traits of this species.

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Publication Details

Journal
Scientific Data
Published
2024-11-06
DOI
https://doi.org/10.1038/s41597-024-04001-9
Citations
9
Primary Topic
Marine Ecology and Invasive Species
Type
article
Field-Weighted Citation Impact
2.54

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article

Chromosome-level genome assembly of the ivory shell Babylonia areolata

Xuan Luo, Miaoqin Huang, Caihuan Ke, Minghui Shen et al.
9 citations
Scientific Data
Marine Ecology and Invasive Species
2.54
article

Chromosome-level genome assembly of the ivory shell Babylonia areolata

Xuan Luo, Miaoqin Huang, Caihuan Ke, Minghui Shen, Weiwei You, Yu Zou, Yexin Chen, Yuan Liang, Jingqiang Fu
article en
9 citations

Abstract

The ivory shell Babylonia areolata is an economically important marine benthic gastropod known for its rapid growth and high nutritional value. B. areolata is distributed in Southeast Asia and the southeast coastal areas of China. In this study, we constructed a high-quality genome for B. areolata using PacBio, Illumina, and Hi-C sequencing technologies. The genome assembly comprised 35 chromosomal sequences with a total length of 1.65 Gb. The scaffold and contig N50 lengths were 53.17 Mb and 2.64 Mb, respectively, with repeat sequences constituting 64.46% of the genome. Furthermore, 26,130 protein-coding genes and 96.75% of the genome's BUSCOs were identified. This inaugural report of a B. areolata genome provides crucial foundational information for further investigations into the biology, genomics, and genetic improvement of economic traits of this species.

Scientific DataVol. 11(1)
Xiamen University (CN), Hainan Provincial Academy of Marine Fisheries and Aquaculture (CN)
National Natural Science Foundation of China, Hainan Provincial Department of Science and Technology, Xiamen University, State Key Laboratory of Marine Environmental Science
Zero hunger, Life in Land
Openalex Percentile: Top 10%
Marine Ecology and Invasive Species
2.54
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