Comparing random walks in graph embedding and link prediction

Random walks find extensive applications across various complex network domains, including embedding generation and link prediction. Despite the widespread utilization of random walks, the precise impact of distinct biases on embedding generation from sequence data and their subsequent effects on link prediction remain elusive. We conduct a comparative analysis of several random walk strategies, including the true self-avoiding random walk and the traditional random walk. We also analyze walks biased towards node degree and those with inverse node degree bias. Diverse adaptations of the node2vec algorithm to induce distinct exploratory behaviors were also investigated. Our empirical findings demonstrate that despite the varied behaviors inherent in these embeddings, only slight performance differences manifest in the context of link prediction. This implies the resilient recovery of network structure, regardless of the specific walk heuristic employed to traverse the network. Consequently, the results suggest that data generated from sequences governed by unknown mechanisms can be successfully reconstructed.

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Publication Details

Journal
PLoS ONE
Published
2024-11-06
DOI
https://doi.org/10.1371/journal.pone.0312863
Citations
2
Primary Topic
Complex Network Analysis Techniques
Type
article
Field-Weighted Citation Impact
0.56

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article

Comparing random walks in graph embedding and link prediction

Filipi N. Silva, Adilson Vital, Diego R. Amancio
2 citations
PLoS ONE
Complex Network Analysis Techniques
0.56
article

Comparing random walks in graph embedding and link prediction

Filipi N. Silva, Adilson Vital, Diego R. Amancio
article en
2 citations

Abstract

Random walks find extensive applications across various complex network domains, including embedding generation and link prediction. Despite the widespread utilization of random walks, the precise impact of distinct biases on embedding generation from sequence data and their subsequent effects on link prediction remain elusive. We conduct a comparative analysis of several random walk strategies, including the true self-avoiding random walk and the traditional random walk. We also analyze walks biased towards node degree and those with inverse node degree bias. Diverse adaptations of the node2vec algorithm to induce distinct exploratory behaviors were also investigated. Our empirical findings demonstrate that despite the varied behaviors inherent in these embeddings, only slight performance differences manifest in the context of link prediction. This implies the resilient recovery of network structure, regardless of the specific walk heuristic employed to traverse the network. Consequently, the results suggest that data generated from sequences governed by unknown mechanisms can be successfully reconstructed.

PLoS ONEVol. 19(11)
Indiana University Bloomington (US), Brazilian Society of Computational and Applied Mathematics (BR)
Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, Fundação de Amparo à Pesquisa do Estado de São Paulo, Conselho Nacional de Desenvolvimento Científico e Tecnológico, Air Force Office of Scientific Research
Openalex Percentile: Top 34%
Complex Network Analysis Techniques
0.56
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