Utilising self-similarity to model the morphometry of the pulmonary arteries

This study aims to model the human pulmonary artery tree, addressing missing information in image segmentation through self-similarity, as demonstrated in pig lung studies. Current CT imaging models define artery tree geometry but often miss small lateral arteries, leading to errors in morphometric descriptions. Data from 10 never-smokers (5F/5M) with normal lung function were used. Intra-pulmonary vessel segmentation and artery/vein separation were performed using Chest Imaging Platform. Data were converted to 3D ‘graphs’ using Python KDTree functions. Sub-graphs were connected by recalibrating branches and connecting closest trees. Length to diameter ratio (L/D), child to parent diameter ratio (D/D<sub>p</sub>), and branching angle (Θ) were calculated. Lateral branches were added to arteries with L/D > 5.0, with lateral dimensions set using values calculated for minor branches in the arterial tree (L/D = 2.46, D/D<sub>p</sub> = 0.4) based on the assumption of self-similarity. Raw uncorrected data (N = 316 ± 65 branches) gave 3.57 ± 3.32, 0.86 ± 0.43, and 46.2 ± 32.7 for L/D, D/D<sub>p</sub>, and Θ, respectively. Addressing connectivity gaps gave N = 330 ± 159 branches. Addition of lateral branches gave N = 452 ± 123 branches with metrics 2.89 ± 1.78, 0.80 ± 0.40, and 36.6 ± 31.97 for L/D, D/D<sub>p</sub>, and Θ, respectively. This compares well with literature values of L/D = 2.8-3.25, D/D<sub>p</sub> = 0.78-0.83, and Θ Utilising self-similarity to model the morphometry of the pulmonary arteries Θ = 15.3-57.0. Connecting disconnected sub-trees and supplementing with self-similar lateral branches yielded a plausible fully-connected tree with morphometry consistent with existing literature.

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Published
2024-09-14
DOI
https://doi.org/10.1183/13993003.congress-2024.pa1614
Primary Topic
Computational Physics and Python Applications
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article
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article

Utilising self-similarity to model the morphometry of the pulmonary arteries

Raúl San Jośe Estépar, Farbod N. Rahaghi, Alys R. Clark, Joyce John et al.
Computational Physics and Python Applications
article

Utilising self-similarity to model the morphometry of the pulmonary arteries

Raúl San Jośe Estépar, Farbod N. Rahaghi, Alys R. Clark, Joyce John, Merryn H. Tawhai, Kelly Burrowes, A. M. Rahimi
article en

Abstract

This study aims to model the human pulmonary artery tree, addressing missing information in image segmentation through self-similarity, as demonstrated in pig lung studies. Current CT imaging models define artery tree geometry but often miss small lateral arteries, leading to errors in morphometric descriptions. Data from 10 never-smokers (5F/5M) with normal lung function were used. Intra-pulmonary vessel segmentation and artery/vein separation were performed using Chest Imaging Platform. Data were converted to 3D ‘graphs’ using Python KDTree functions. Sub-graphs were connected by recalibrating branches and connecting closest trees. Length to diameter ratio (L/D), child to parent diameter ratio (D/D<sub>p</sub>), and branching angle (Θ) were calculated. Lateral branches were added to arteries with L/D > 5.0, with lateral dimensions set using values calculated for minor branches in the arterial tree (L/D = 2.46, D/D<sub>p</sub> = 0.4) based on the assumption of self-similarity. Raw uncorrected data (N = 316 ± 65 branches) gave 3.57 ± 3.32, 0.86 ± 0.43, and 46.2 ± 32.7 for L/D, D/D<sub>p</sub>, and Θ, respectively. Addressing connectivity gaps gave N = 330 ± 159 branches. Addition of lateral branches gave N = 452 ± 123 branches with metrics 2.89 ± 1.78, 0.80 ± 0.40, and 36.6 ± 31.97 for L/D, D/D<sub>p</sub>, and Θ, respectively. This compares well with literature values of L/D = 2.8-3.25, D/D<sub>p</sub> = 0.78-0.83, and Θ Utilising self-similarity to model the morphometry of the pulmonary arteries Θ = 15.3-57.0. Connecting disconnected sub-trees and supplementing with self-similar lateral branches yielded a plausible fully-connected tree with morphometry consistent with existing literature.

Brigham and Women's Hospital (US), University of Auckland (NZ), Auckland University of Technology (NZ)
Openalex Percentile: Top 82%
Computational Physics and Python Applications
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