Genomes OnLine Database (GOLD) v.10: new features and updates

The Genomes OnLine Database (GOLD; https://gold.jgi.doe.gov/) at the Department of Energy Joint Genome Institute is a comprehensive online metadata repository designed to catalog and manage information related to (meta)genomic sequence projects. GOLD provides a centralized platform where researchers can access a wide array of metadata from its four organization levels namely Study, Organism/Biosample, Sequencing Project and Analysis Project. GOLD continues to serve as a valuable resource and has seen significant growth and expansion since its inception in 1997. With its expanded role as a collaborative platform, it not only actively imports data from other primary repositories like National Center for Biotechnology Information but also supports contributions from researchers worldwide. This collaborative approach has enriched the database with diverse datasets, creating a more integrated resource to enhance scientific insights. As genomic research becomes increasingly integral to various scientific disciplines, more researchers and institutions are turning to GOLD for their metadata needs. To meet this growing demand, GOLD has expanded by adding diverse metadata fields, intuitive features, advanced search capabilities and enhanced data visualization tools, making it easier for users to find and interpret relevant information. This manuscript provides an update and highlights the new features introduced over the last 2 years.

Authors

Institutions

Publication Details

Journal
Nucleic Acids Research
Published
2024-11-05
DOI
https://doi.org/10.1093/nar/gkae1000
Citations
27
Primary Topic
Research Data Management Practices
Type
article
Field-Weighted Citation Impact
21.04

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Genomes OnLine Database (GOLD) v.10: new features and updates

Tanja Woyke, Galina Ovchinnikova, Mahathi Kandimalla, Nikos C. Kyrpides et al.
27 citations
Nucleic Acids Research
Research Data Management Practices
21.04
article

Genomes OnLine Database (GOLD) v.10: new features and updates

Tanja Woyke, Galina Ovchinnikova, Mahathi Kandimalla, Nikos C. Kyrpides, Supratim Mukherjee, Anuha Reddy, I-Min A. Chen, T. B. K. Reddy, Emiley A. Eloe‐Fadrosh, Cindy Tianqing Li, Dimitri Stamatis, Natalia Ivanova, Van Handke
article en
27 citations

Abstract

The Genomes OnLine Database (GOLD; https://gold.jgi.doe.gov/) at the Department of Energy Joint Genome Institute is a comprehensive online metadata repository designed to catalog and manage information related to (meta)genomic sequence projects. GOLD provides a centralized platform where researchers can access a wide array of metadata from its four organization levels namely Study, Organism/Biosample, Sequencing Project and Analysis Project. GOLD continues to serve as a valuable resource and has seen significant growth and expansion since its inception in 1997. With its expanded role as a collaborative platform, it not only actively imports data from other primary repositories like National Center for Biotechnology Information but also supports contributions from researchers worldwide. This collaborative approach has enriched the database with diverse datasets, creating a more integrated resource to enhance scientific insights. As genomic research becomes increasingly integral to various scientific disciplines, more researchers and institutions are turning to GOLD for their metadata needs. To meet this growing demand, GOLD has expanded by adding diverse metadata fields, intuitive features, advanced search capabilities and enhanced data visualization tools, making it easier for users to find and interpret relevant information. This manuscript provides an update and highlights the new features introduced over the last 2 years.

Nucleic Acids ResearchVol. 53(D1)
Lawrence Berkeley National Laboratory (US), Joint Genome Institute (US)
U.S. Department of Energy, Office of Science
Industry, innovation and infrastructure
Openalex Percentile: Top 1%
Research Data Management Practices
21.04
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.