Parallel Simulations of the Sharp Wave-Ripples of the Hippocampus on Multicore CPUs and GPUs

The simulation of realistic systems plays a crucial role in modern sciences. Complex organs such as the brain can be described by mathematical models to reproduce biological behaviors. In the brain, the hippocampus is a critical region for memory and learning. In the literature, a model to reproduce the memory consolidation mechanism has been proposed. This model exhibits a high degree of biological realism, though it is accompanied by a significant increase in computational complexity. This paper proposes the development of parallel simulation targeting different devices, namely multicore CPUs and GPUs. The experiments highlighted that the biological realism is maintained, together with a significant decrease of the processing times. Finally, the conducted analysis highlights that the GPU is one of the most suitable technologies for this kind of simulation.

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Publication Details

Journal
Applied Sciences
Published
2024-10-31
DOI
https://doi.org/10.3390/app14219967
Primary Topic
Photoreceptor and optogenetics research
Type
article
Field-Weighted Citation Impact
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article

Parallel Simulations of the Sharp Wave-Ripples of the Hippocampus on Multicore CPUs and GPUs

Emanuele Torti, Elisa Marenzi, Giovanni Danese, Francesco Leporati et al.
Applied Sciences
Photoreceptor and optogenetics research
article

Parallel Simulations of the Sharp Wave-Ripples of the Hippocampus on Multicore CPUs and GPUs

Emanuele Torti, Elisa Marenzi, Giovanni Danese, Francesco Leporati, Simone Migliazza
article en

Abstract

The simulation of realistic systems plays a crucial role in modern sciences. Complex organs such as the brain can be described by mathematical models to reproduce biological behaviors. In the brain, the hippocampus is a critical region for memory and learning. In the literature, a model to reproduce the memory consolidation mechanism has been proposed. This model exhibits a high degree of biological realism, though it is accompanied by a significant increase in computational complexity. This paper proposes the development of parallel simulation targeting different devices, namely multicore CPUs and GPUs. The experiments highlighted that the biological realism is maintained, together with a significant decrease of the processing times. Finally, the conducted analysis highlights that the GPU is one of the most suitable technologies for this kind of simulation.

Applied SciencesVol. 14(21)
University of Pavia (IT)
Openalex Percentile: Top 79%
Photoreceptor and optogenetics research
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Parallel Simulations of the Sharp Wave-Ripples of the Hippocampus on Multicore CPUs and GPUs — Emanuele Torti, Elisa Marenzi, et al. · Applied Sciences (2024) | TGRS Research Map | TGRS