448 Defining the tumor-infiltrating lymphocyte antigenic landscape in head and neck cancer
<h3>Background</h3> Head and neck squamous cell carcinoma (HNSCC) is an aggressive disease largely stemming from human papilloma virus infection, tobacco and alcohol intake, and inherited mutations resulting in a relatively high tumor mutational burden.<sup>1</sup> HNSCC is considered amenable to immunotherapy and a subset of patients have a comparatively dense immune infiltrate.<sup>2</sup>Adoptive cell transfer (ACT) with tumor-infiltrating lymphocytes (TIL) is one promising therapeutic strategy that harnesses a polyclonal population of T cells with enriched specificity and reactivity toward tumor-derived antigens. <h3>Methods</h3> DNA and RNA were extracted from HNSCC followed by whole exome and RNA sequencing. Long peptides (25mers) were custom synthesized spanning neoantigens predicted to bind major histocompatibility complex (MHC) proteins. TIL expanded from HNSCC were co-cultured with autologous antigen presenting cells (APCs) loaded with neoantigen peptides. TIL were analyzed for increased surface expression of OX40 and 4-1BB by flow cytometry, and secretion of granzyme B, interferon gamma (IFNg), and tumor necrosis factor alpha (TNFa). Clonotype analysis was completed by T cell receptor (TCR) sequencing. Autologous patient-derived xenograft (PDX)-bearing mice received ACT with TIL and tumor area was measured until endpoint analysis of T cell infiltration by flow cytometry. Immunopeptidomics analysis by mass spectrometry was performed on MHC-bound peptides on APCs. <h3>Results</h3> Across eight HNSCC samples, an average of 139 somatic mutations were discovered (range 56–232) and a mean of 101 25mers were predicted to bind to each patient’s respective MHC (range 43–160). Systematic analysis of the first patient sample revealed a candidate neoantigen ‘hit’ resulting in activation of 45% of CD4+ TIL by OX40+/4-1BB+ induction, while CD8+ TIL remained unchanged. Neoantigen-reactive TIL secreted granzyme B, IFNg, and TNFa, in a dose-dependent manner, which was abrogated in the presence of HLA-DQ blockade. TCR sequencing revealed an oligoclonal T cell population. Pilot non-clinical ACT experiments in mice demonstrated TIL engraftment and tumor infiltration. Initial APC immunopeptidomics analysis found nine unique epitopes bound to MHC Class I and 17 peptides presented by MHC Class II following neoantigen pulse. Additional sample analysis is ongoing. <h3>Conclusions</h3> Neoantigen-reactive TIL can be selected and expanded from solid tumors.<sup>3</sup> Here, we show that expanded HNSCC TIL contain neoantigen-reactive effector T cells. Ongoing studies aim to expand this investigation to better understand the landscape of T cell reactivity and the dynamic antigenic and cellular determinants involved in the anti-tumor immune response. Ultimately, we plan to determine the potential therapeutic benefit of an enriched antigen-reactive TIL-ACT product for HNSCC patients. <h3>References</h3> Alexandrov LB, Nik-Zainal S, Wedge DC, Aparicio SA, Behjati S, Biankin AV, Bignell GR, Bolli N, Borg A, Borresen-Dale AL, Boyault S, Burkhardt B, Butler AP, Caldas C, Davies HR, Desmedt C, Eils R, Eyfjord JE, Foekens JA, Greaves M, Hosoda F, Hutter B, Ilicic T, Imbeaud S, Imielinski M, Jager N, Jones DT, Jones D, Knappskog S, Kool M, Lakhani SR, Lopez-Otin C, Martin S, Munshi NC, Nakamura H, Northcott PA, Pajic M, Papaemmanuil E, Paradiso A, Pearson JV, Puente XS, Raine K, Ramakrishna M, Richardson AL, Richter J, Rosenstiel P, Schlesner M, Schumacher TN, Span PN, Teague JW, Totoki Y, Tutt AN, Valdes-Mas R, van Buuren MM, van ‘t Veer L, Vincent-Salomon A, Waddell N, Yates LR, Australian Pancreatic Cancer Genome I, Consortium IBC, Consortium IM-S, PedBrain I, Zucman-Rossi J, Futreal PA, McDermott U, Lichter P, Meyerson M, Grimmond SM, Siebert R, Campo E, Shibata T, Pfister SM, Campbell PJ, Stratton MR. Signatures of mutational processes in human cancer. <i>Nature</i> 2013;<b>500</b>(7463):415–21. Epub 20130814. doi: 10.1038/nature12477. PubMed PMID: 23945592; PMCID: PMC3776390. Brooks JM, Menezes AN, Ibrahim M, Archer L, Lal N, Bagnall CJ, von Zeidler SV, Valentine HR, Spruce RJ, Batis N, Bryant JL, Hartley M, Kaul B, Ryan GB, Bao R, Khattri A, Lee SP, Ogbureke KUE, Middleton G, Tennant DA, Beggs AD, Deeks J, West CML, Cazier JB, Willcox BE, Seiwert TY, Mehanna H. Development and validation of a combined hypoxia and immune prognostic classifier for head and neck cancer. <i>Clin Cancer Res</i> 2019;<b>25</b>(17):5315–28. Epub 20190610. doi: 10.1158/1078-0432.CCR-18-3314. PubMed PMID: 31182433. Hall MS, Teer JK, Yu X, Branthoover H, Snedal S, Rodriguez-Valentin M, Nagle L, Scott E, Schachner B, Innamarato P, Hall AM, Blauvelt J, Rich CJ, Richards AD, Ceccarelli J, Langer TJ, Yoder SJ, Beatty MS, Cox CA, Messina JL, Abate-Daga D, Mule JJ, Mullinax JE, Sarnaik AA, Pilon-Thomas S. Neoantigen-specific CD4(+) tumor-infiltrating lymphocytes are potent effectors identified within adoptive cell therapy products for metastatic melanoma patients. <i>J Immunother Cancer</i> 2023;<b>11</b>(10). doi: 10.1136/jitc-2023-007288. PubMed PMID: 37802604; PMCID: PMC10565316. <h3>Ethics Approval</h3> MCC18510 was approved by Chesapeake IRB approval number Pro00015586 and all participants gave informed consent before taking part.
Authors
- MacLean Hall (ORCID: https://orcid.org/0000-0002-5626-1619)
- Shari Pilon‐Thomas (ORCID: https://orcid.org/0000-0001-7785-3034)
- Christine H. Chung (ORCID: https://orcid.org/0000-0001-5199-4306)
- Matthew Beatty (ORCID: https://orcid.org/0000-0003-3198-9264)
- Holly Branthoover (ORCID: https://orcid.org/0000-0001-7808-1662)
- Emily Brennan (ORCID: https://orcid.org/0000-0002-0388-4302)
- Michael I Carter
- Luz Nagle (ORCID: https://orcid.org/0000-0001-8229-0360)
- Johannes Ali
- Kedar Kirtane (ORCID: https://orcid.org/0000-0003-1302-9577)
- Mary Thomas (ORCID: https://orcid.org/0000-0003-1372-3032)
- Jamie Blauvelt (ORCID: https://orcid.org/0000-0002-4529-7990)
- John E. Mullinax (ORCID: https://orcid.org/0000-0002-9596-6785)
- Madeline Rodriguez Valentin
- Alex M. Jaeger (ORCID: https://orcid.org/0000-0002-4319-4330)
- Jamie K. Teer (ORCID: https://orcid.org/0000-0003-4513-0282)
- Amy M Hall
- Barbara Sennino
- Maria I. Poole (ORCID: https://orcid.org/0009-0004-8006-8036)
- Ashley Thomas
- Nina Obertopp (ORCID: https://orcid.org/0009-0006-5100-1590)
- Matthew Thayer
- Alaa Taha
- Nicholas Couchara
Institutions
- Moffitt Cancer Center (US)
- Cell Biologics (United States) (US)
Publication Details
- Journal
- Regular and Young Investigator Award Abstracts
- Published
- 2024-11-01
- DOI
- https://doi.org/10.1136/jitc-2024-sitc2024.0448
- Primary Topic
- Cancer Immunotherapy and Biomarkers
- Type
- article
- Field-Weighted Citation Impact
- 0.00