Potential Cryptic Diversity in the Genus Scoliodon (Carcharhiniformes: Carcharhinidae): Insights from Mitochondrial Genome Sequencing

<i>Scoliodon</i> is a genus of small placental sharks living in offshore waters. For a long time, the genus was considered a monotypic genus until a valid species, <i>Scoliodon macrorhynchos</i>, was confirmed in 2010. However, <i>S. muelleri</i> in the same study was not widely recognized because of the lack of evidence. In this study, we obtained the complete mitochondrial genome of the genus <i>Scoliodon</i> from Ranong, Thailand, and tentatively named it <i>Scoliodon</i> sp. By comparing the complete mitochondrial genome with those of two other <i>Scoliodon</i> species and conducting phylogenetic and divergence time analyses, we determined that <i>Scoliodon</i> sp. diverged from the other species. These findings indicate the potential for a new cryptic species (<i>Scoliodon</i> sp.) in the <i>Scoliodon</i> genus. This conclusion was further supported by a subsequent analysis of the published <i>S. laticaudus</i> control region sequences from previous studies. Finally, based on these conclusions, we used machine learning to derive a new identification method for the cryptic species. This approach may be useful for the discovery of new species or cryptic species in other organisms.

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Journal
International Journal of Molecular Sciences
Published
2024-11-04
DOI
https://doi.org/10.3390/ijms252111851
Citations
2
Primary Topic
Ichthyology and Marine Biology
Type
article
Field-Weighted Citation Impact
1.38

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article

Potential Cryptic Diversity in the Genus Scoliodon (Carcharhiniformes: Carcharhinidae): Insights from Mitochondrial Genome Sequencing

Pichai Sonchaeng, Sarawut Siriwong, Peiyuan Ye, Yuanxiang Miao et al.
2 citations
International Journal of Molecular Sciences
Ichthyology and Marine Biology
1.38
article

Potential Cryptic Diversity in the Genus Scoliodon (Carcharhiniformes: Carcharhinidae): Insights from Mitochondrial Genome Sequencing

Pichai Sonchaeng, Sarawut Siriwong, Peiyuan Ye, Yuanxiang Miao, Chen Wang, Xiao Chen, Junjie Wang, Shaobo Chen
article en
2 citations

Abstract

<i>Scoliodon</i> is a genus of small placental sharks living in offshore waters. For a long time, the genus was considered a monotypic genus until a valid species, <i>Scoliodon macrorhynchos</i>, was confirmed in 2010. However, <i>S. muelleri</i> in the same study was not widely recognized because of the lack of evidence. In this study, we obtained the complete mitochondrial genome of the genus <i>Scoliodon</i> from Ranong, Thailand, and tentatively named it <i>Scoliodon</i> sp. By comparing the complete mitochondrial genome with those of two other <i>Scoliodon</i> species and conducting phylogenetic and divergence time analyses, we determined that <i>Scoliodon</i> sp. diverged from the other species. These findings indicate the potential for a new cryptic species (<i>Scoliodon</i> sp.) in the <i>Scoliodon</i> genus. This conclusion was further supported by a subsequent analysis of the published <i>S. laticaudus</i> control region sequences from previous studies. Finally, based on these conclusions, we used machine learning to derive a new identification method for the cryptic species. This approach may be useful for the discovery of new species or cryptic species in other organisms.

International Journal of Molecular SciencesVol. 25(21)
South China Agricultural University (CN), Burapha University (TH), South China Normal University (CN), Xiamen University (CN), ShanghaiTech University (CN), Zhejiang Mariculture Research Institute (CN)
National Key Research and Development Program of China
Life below water
Openalex Percentile: Top 18%
Ichthyology and Marine Biology
1.38
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