MAGqual: a stand-alone pipeline to assess the quality of metagenome-assembled genomes
The MAGqual pipeline offers an accessible way to evaluate metagenome quality and generate metadata on a large scale. MAGqual is built in Snakemake to ensure readability and scalability, and its open-source nature promotes accessibility, community development, and ease of updates. MAGqual is built in Snakemake, R, and Python and is available under the MIT license on GitHub at https://github.com/ac1513/MAGqual . Video Abstract.
Authors
- J. Chong (ORCID: https://orcid.org/0000-0001-9447-7421)
- Annabel Cansdale (ORCID: https://orcid.org/0000-0001-9548-3110)
Institutions
- University of York (GB)
Publication Details
- Journal
- Microbiome
- Published
- 2024-11-04
- DOI
- https://doi.org/10.1186/s40168-024-01949-z
- Citations
- 3
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.70
Funders
- Biotechnology and Biological Sciences Research Council