Migration patterns, habitat use and genetic origins of sea trout (Salmo trutta) in Norfolk chalk streams: implications for management of a mixed stock fishery

Abstract Sea trout, the anadromous ecotype of the species Salmo trutta , are subject to multiple threats, including exploitation and aquaculture impacts in the marine environment, habitat fragmentation and pollution in freshwaters, loss of genetic resilience due to interbreeding with hatchery strains and environmental change. Small streams contribute relatively little biomass to European sea trout stocks but are thought to be important in maintaining genetic diversity and therefore wider population resilience. The current study combined data from acoustic telemetry, stable isotopes, genetics and scalimetry to assess the current status of sea trout in the rivers Stiffkey and Glaven, two locally important chalkstreams in East Anglia, UK, to provide an evidence base for future management. The incidence of anadromy was low, and most sea trout were near migrants, residing in the lower reaches of rivers and close to the tidal outfalls. A small number migrated to the North Sea where they were vulnerable to exploitation in the coastal fishery, which comprises a mixed stock. Straying between the two rivers was recorded among 10% of sea trout, leading to apparent high gene flow. Nonetheless, genetic data also demonstrated structuring of River Glaven trout into two distinct groups. Quantification of patterns of freshwater and estuarine habitat use, and of passage at cross-channel obstructions, was used to identify where remedial measures such as habitat restoration would be most effectively targeted. Findings are discussed in the context of local supplementary stocking and the potential impact of the nearshore fishery on limited and vulnerable small stream anadromous trout populations.