The R.O.A.D. to precision medicine

We propose a novel framework that addresses the deficiencies of Randomized clinical trial data subgroup analysis while it transforms ObservAtional Data to be used as if they were randomized, thus paving the road for precision medicine. Our approach counters the effects of unobserved confounding in observational data through a two-step process that adjusts predicted outcomes under treatment. These adjusted predictions train decision trees, optimizing treatment assignments for patient subgroups based on their characteristics, enabling intuitive treatment recommendations. Implementing this framework on gastrointestinal stromal tumors (GIST) data, including genetic sub-cohorts, showed that our tree recommendations outperformed current guidelines in an external cohort. Furthermore, we extended the application of this framework to RCT data from patients with extremity sarcomas. Despite initial trial indications of universal treatment necessity, our framework identified a subset of patients who may not require treatment. Once again, we successfully validated our recommendations in an external cohort.

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Publication Details

Journal
npj Digital Medicine
Published
2024-11-03
DOI
https://doi.org/10.1038/s41746-024-01291-6
Citations
4
Primary Topic
Gastrointestinal Tumor Research and Treatment
Type
article
Field-Weighted Citation Impact
1.86

Funders

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article

The R.O.A.D. to precision medicine

Dimitris Bertsimas, Georgios Antonios Margonis, Angelos Georgios Koulouras
4 citations
npj Digital Medicine
Gastrointestinal Tumor Research and Treatment
1.86
article

The R.O.A.D. to precision medicine

Dimitris Bertsimas, Georgios Antonios Margonis, Angelos Georgios Koulouras
article en
4 citations

Abstract

We propose a novel framework that addresses the deficiencies of Randomized clinical trial data subgroup analysis while it transforms ObservAtional Data to be used as if they were randomized, thus paving the road for precision medicine. Our approach counters the effects of unobserved confounding in observational data through a two-step process that adjusts predicted outcomes under treatment. These adjusted predictions train decision trees, optimizing treatment assignments for patient subgroups based on their characteristics, enabling intuitive treatment recommendations. Implementing this framework on gastrointestinal stromal tumors (GIST) data, including genetic sub-cohorts, showed that our tree recommendations outperformed current guidelines in an external cohort. Furthermore, we extended the application of this framework to RCT data from patients with extremity sarcomas. Despite initial trial indications of universal treatment necessity, our framework identified a subset of patients who may not require treatment. Once again, we successfully validated our recommendations in an external cohort.

npj Digital MedicineVol. 7(1)
Memorial Sloan Kettering Cancer Center (US), Massachusetts Institute of Technology (US)
Memorial Sloan-Kettering Cancer Center, Alexander S. Onassis Public Benefit Foundation, National Cancer Institute
Good health and well-being
Openalex Percentile: Top 14%
Gastrointestinal Tumor Research and Treatment
1.86
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The R.O.A.D. to precision medicine — Dimitris Bertsimas, Georgios Antonios Margonis, et al. · npj Digital Medicine (2024) | TGRS Research Map | TGRS