DNA Metabarcoding Reveals the Dietary Composition for Smooth‐Coated Otter (<scp><i>Lutrogale perspicillata</i></scp>) and Asian Small‐Clawed Otter (<scp><i>Aonyx cinereus</i></scp>) in Malaysia

ABSTRACT The declining population of otter species in Malaysia, including the Asian small‐clawed otter ( Aonyx cinereus ), smooth‐coated otter ( Lutrogale perspicillata ) and hairy‐nosed otter ( Lutra sumatrana ), is primarily attributed to habitat changes. Understanding the ecological aspects of otters, including their diets, is crucial for formulating effective conservation management strategies. To address this knowledge gap, we employed Next Generation Sequencing (NGS) as an alternative approach to enhance our understanding of the species' food chain. Specifically, this study investigated the diets of Asian small‐clawed otters and smooth‐coated otters by analysing an ~130 bp segment of the Cytochrome b (Cyt b ) gene using Illumina Miniseq platform. The analysis successfully generated 572,311 reads, identifying four families, nine genera and 11 food species consumed by both otter species. Smooth‐coated otters primarily consumed fish (96%) and frogs (4%), whereas Asian small‐clawed otters exclusively fed on fish (100%), with the genus Esomus being the predominant fish genus found in the spraints. The diversity analysis of their diets revealed significant differences between two species ( p &lt; 0.05). As a result, DNA metabarcoding provides a reliable method for verifying otter dietary information and can serve as a valuable tool in assessing fish diversity, thus contributing significantly to the management and conservation of otter populations, particularly in Malaysia.

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Journal
Aquatic Conservation Marine and Freshwater Ecosystems
Published
2024-10-31
DOI
https://doi.org/10.1002/aqc.4263
Citations
1
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
0.46

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article

DNA Metabarcoding Reveals the Dietary Composition for Smooth‐Coated Otter (Lutrogale perspicillata) and Asian Small‐Clawed Otter (Aonyx cinereus) in Malaysia

Abd Rahman Mohd‐Ridwan, Mohd Lokman Ilham‐Norhakim, Hidayah Haris, Nur Hartini Sariyati et al.
1 citations
Aquatic Conservation Marine and Freshwater Ecosystems
Environmental DNA in Biodiversity Studies
0.46
article

DNA Metabarcoding Reveals the Dietary Composition for Smooth‐Coated Otter (Lutrogale perspicillata) and Asian Small‐Clawed Otter (Aonyx cinereus) in Malaysia

Abd Rahman Mohd‐Ridwan, Mohd Lokman Ilham‐Norhakim, Hidayah Haris, Nur Hartini Sariyati, Muhammad Abu Bakar Abdul‐Latiff, Kaviarasu Munian, Nurfatiha Akmal Fawwazah Abdullah‐Fauzi, Nor Rahman Aifat, Pazil Abdul‐Patah, Daisuke Waku, M. N. Shukor, Hiroshi Sasaki, Badrul Munir Md‐Zain, Nursyuhada Othman
article en
1 citations

Abstract

ABSTRACT The declining population of otter species in Malaysia, including the Asian small‐clawed otter ( Aonyx cinereus ), smooth‐coated otter ( Lutrogale perspicillata ) and hairy‐nosed otter ( Lutra sumatrana ), is primarily attributed to habitat changes. Understanding the ecological aspects of otters, including their diets, is crucial for formulating effective conservation management strategies. To address this knowledge gap, we employed Next Generation Sequencing (NGS) as an alternative approach to enhance our understanding of the species' food chain. Specifically, this study investigated the diets of Asian small‐clawed otters and smooth‐coated otters by analysing an ~130 bp segment of the Cytochrome b (Cyt b ) gene using Illumina Miniseq platform. The analysis successfully generated 572,311 reads, identifying four families, nine genera and 11 food species consumed by both otter species. Smooth‐coated otters primarily consumed fish (96%) and frogs (4%), whereas Asian small‐clawed otters exclusively fed on fish (100%), with the genus Esomus being the predominant fish genus found in the spraints. The diversity analysis of their diets revealed significant differences between two species ( p &lt; 0.05). As a result, DNA metabarcoding provides a reliable method for verifying otter dietary information and can serve as a valuable tool in assessing fish diversity, thus contributing significantly to the management and conservation of otter populations, particularly in Malaysia.

Aquatic Conservation Marine and Freshwater EcosystemsVol. 34(11)
Chikushi Jogakuen University (JP), Tokyo University of Agriculture (JP), Forest Research Institute Malaysia (MY), Universiti of Malaysia Sabah (MY), Universiti Malaysia Sarawak (MY), National University of Malaysia (MY), Tun Hussein Onn University of Malaysia (MY)
Universiti Tun Hussein Onn Malaysia, Universiti Kebangsaan Malaysia, Tokyo University of Agriculture, Kementerian Tenaga dan Sumber Asli
Life in Land
Openalex Percentile: Top 28%
Environmental DNA in Biodiversity Studies
0.46
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