SSBD: an ecosystem for enhanced sharing and reuse of bioimaging data

SSBD (https://ssbd.riken.jp) is a platform for the sharing and reuse of bioimaging data. As part of efforts to build a bioimaging data ecosystem, SSBD has recently been updated to a two-tiered data resource comprising SSBD:repository, a public repository for the sharing of all types of bioimaging data reported in journals, and SSBD:database, an added-value database for the sharing of curated, highly reusable, metadata-rich data. This update addresses the conflicting demands of rapid data publication and sharing of richly annotated data, thereby promoting bioimaging data sharing and reuse. With this update, SSBD is now positioned as a core repository and database within the foundingGIDE, an international consortium working to establish a global image data ecosystem. Harmonizing metadata between data resources enables cross-searching and data exchange with data resources from other countries and regions.

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Publication Details

Journal
Nucleic Acids Research
Published
2024-10-31
DOI
https://doi.org/10.1093/nar/gkae860
Citations
8
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
5.30

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article

SSBD: an ecosystem for enhanced sharing and reuse of bioimaging data

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8 citations
Nucleic Acids Research
Cell Image Analysis Techniques
5.30
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SSBD: an ecosystem for enhanced sharing and reuse of bioimaging data

Shuichi Onami, Yukako Tohsato, Koji Kyoda, Hiroshi Yamamoto, Yuki Yamagata, Hiroya Itoga, Yasutaka Nakano, Fangfang Wang, Emi Fujisawa, Miguel Miranda-Miranda
article en
8 citations

Abstract

SSBD (https://ssbd.riken.jp) is a platform for the sharing and reuse of bioimaging data. As part of efforts to build a bioimaging data ecosystem, SSBD has recently been updated to a two-tiered data resource comprising SSBD:repository, a public repository for the sharing of all types of bioimaging data reported in journals, and SSBD:database, an added-value database for the sharing of curated, highly reusable, metadata-rich data. This update addresses the conflicting demands of rapid data publication and sharing of richly annotated data, thereby promoting bioimaging data sharing and reuse. With this update, SSBD is now positioned as a core repository and database within the foundingGIDE, an international consortium working to establish a global image data ecosystem. Harmonizing metadata between data resources enables cross-searching and data exchange with data resources from other countries and regions.

Nucleic Acids ResearchVol. 53(D1)
Ritsumeikan University (JP), RIKEN BioResource Research Center (JP), RIKEN Center for Biosystems Dynamics Research (JP)
European Commission, Japan Society for the Promotion of Science, RIKEN, Core Research for Evolutional Science and Technology, National Bioscience Database Center, RIKEN Center for Biosystems Dynamics Research
Openalex Percentile: Top 5%
Cell Image Analysis Techniques
5.30
DOIOpen Access PDFOpenAlex
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