Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis

Consisting of trees, climbers and herbs exclusively in the intertidal environments, mangrove forest is one of the most extreme and vulnerable ecosystems of our planet and has long been of great interest for biologists and ecologists. Here, we first assembled the chromosome-scale genome of a climber mangrove plant, Dalbergia candenatensis. The assembled genome size is approximately 474.55 Mb, with a scaffold N50 of 48.1 Mb, a complete BUSCO score of 98.4%, and a high LTR Assembly Index value of 21. The genome contained 283.46 Mb (59.74%) repetitive sequences, and 29,554 protein-coding genes were predicted, of which 87.54% were functionally annotated in five databases. The high-quality genome assembly and annotation presented herein provide a valuable genomic resource that will expedite genomic and evolutionary studies of mangrove plants and facilitate the elucidation of molecular mechanisms underlying the salt- and water-logging-tolerance of mangrove plants.

Authors

Institutions

Publication Details

Journal
Scientific Data
Published
2024-10-31
DOI
https://doi.org/10.1038/s41597-024-04032-2
Citations
1
Primary Topic
Coastal wetland ecosystem dynamics
Type
article
Field-Weighted Citation Impact
0.46

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis

Huiwen Huang, Shiran Gu, Zhongtao Zhao, Tieyao Tu et al.
1 citations
Scientific Data
Coastal wetland ecosystem dynamics
0.46
article

Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis

Huiwen Huang, Shiran Gu, Zhongtao Zhao, Tieyao Tu, Miaomiao Shi, Yu Zhang, Shijin Li, Xiangping Wang
article en
1 citations

Abstract

Consisting of trees, climbers and herbs exclusively in the intertidal environments, mangrove forest is one of the most extreme and vulnerable ecosystems of our planet and has long been of great interest for biologists and ecologists. Here, we first assembled the chromosome-scale genome of a climber mangrove plant, Dalbergia candenatensis. The assembled genome size is approximately 474.55 Mb, with a scaffold N50 of 48.1 Mb, a complete BUSCO score of 98.4%, and a high LTR Assembly Index value of 21. The genome contained 283.46 Mb (59.74%) repetitive sequences, and 29,554 protein-coding genes were predicted, of which 87.54% were functionally annotated in five databases. The high-quality genome assembly and annotation presented herein provide a valuable genomic resource that will expedite genomic and evolutionary studies of mangrove plants and facilitate the elucidation of molecular mechanisms underlying the salt- and water-logging-tolerance of mangrove plants.

Scientific DataVol. 11(1)
Beijing Botanical Garden (CN), South China Botanical Garden (CN), China National Botanical Garden
National Natural Science Foundation of China
Life in Land
Openalex Percentile: Top 29%
Coastal wetland ecosystem dynamics
0.46
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.