LF-SynthSeg: Label-Free Brain Tissue-Assisted Tumor Synthesis and Segmentation

Unsupervised brain tumor segmentation is pivotal in realms of disease diagnosis, surgical planning, and treatment response monitoring, with the distinct advantage of obviating the need for labeled data. Traditional methodologies in this domain, however, often fall short in fully capitalizing on the extensive prior knowledge of brain tissue, typically approaching the task merely as an anomaly detection challenge. In our research, we present an innovative strategy that effectively integrates brain tissues' prior knowledge into both the synthesis and segmentation of brain tumor from T2-weighted Magnetic Resonance Imaging scans. Central to our method is the tumor synthesis mechanism, employing randomly generated ellipsoids in conjunction with the intensity profiles of brain tissues. This methodology not only fosters a significant degree of variation in the tumor presentations within the synthesized images but also facilitates the creation of an essentially unlimited pool of abnormal T2-weighted images. These synthetic images closely replicate the characteristics of real tumor-bearing scans. Our training protocol extends beyond mere tumor segmentation; it also encompasses the segmentation of brain tissues, thereby directing the network's attention to the boundary relationship between brain tumor and brain tissue, thus improving the robustness of our method. We evaluate our approach across five widely recognized public datasets (BRATS 2019, BRATS 2020, BRATS 2021, PED and SSA), and the results show that our method outperforms state-of-the-art unsupervised tumor segmentation methods by large margins. Moreover, the proposed method achieves more than 92 of the fully supervised performance on the same testing datasets.

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Publication Details

Journal
IEEE Journal of Biomedical and Health Informatics
Published
2024-10-31
DOI
https://doi.org/10.1109/jbhi.2024.3489721
Citations
8
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
5.30

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article

LF-SynthSeg: Label-Free Brain Tissue-Assisted Tumor Synthesis and Segmentation

Pujin Cheng, Junyan Lyu, Xiaoying Tang, Li Lin et al.
8 citations
IEEE Journal of Biomedical and Health Informatics
Cell Image Analysis Techniques
5.30
article

LF-SynthSeg: Label-Free Brain Tissue-Assisted Tumor Synthesis and Segmentation

Pujin Cheng, Junyan Lyu, Xiaoying Tang, Li Lin, Pengxiao Xu
article en
8 citations

Abstract

Unsupervised brain tumor segmentation is pivotal in realms of disease diagnosis, surgical planning, and treatment response monitoring, with the distinct advantage of obviating the need for labeled data. Traditional methodologies in this domain, however, often fall short in fully capitalizing on the extensive prior knowledge of brain tissue, typically approaching the task merely as an anomaly detection challenge. In our research, we present an innovative strategy that effectively integrates brain tissues' prior knowledge into both the synthesis and segmentation of brain tumor from T2-weighted Magnetic Resonance Imaging scans. Central to our method is the tumor synthesis mechanism, employing randomly generated ellipsoids in conjunction with the intensity profiles of brain tissues. This methodology not only fosters a significant degree of variation in the tumor presentations within the synthesized images but also facilitates the creation of an essentially unlimited pool of abnormal T2-weighted images. These synthetic images closely replicate the characteristics of real tumor-bearing scans. Our training protocol extends beyond mere tumor segmentation; it also encompasses the segmentation of brain tissues, thereby directing the network's attention to the boundary relationship between brain tumor and brain tissue, thus improving the robustness of our method. We evaluate our approach across five widely recognized public datasets (BRATS 2019, BRATS 2020, BRATS 2021, PED and SSA), and the results show that our method outperforms state-of-the-art unsupervised tumor segmentation methods by large margins. Moreover, the proposed method achieves more than 92 of the fully supervised performance on the same testing datasets.

IEEE Journal of Biomedical and Health InformaticsVol. 29(2)
Southern University of Science and Technology (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 5%
Cell Image Analysis Techniques
5.30
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