Presence-only fisheries bycatch data produce biased species distribution predictions for Alcyonacean corals on British Columbia’s continental shelf and slope

Sedentary benthic species such as Alcyonacea corals form critical habitat for fishes and invertebrates. Assessing anthropogenic risks to these organisms requires unbiased, species distribution models (SDMs) that attempt to map probabilities of coral presence in relation to bio-physical ocean characteristics; however, in deep-water settings, the accuracy of SDMs is highly variable and dependent on spatial and taxonomic resolution. Here we investigated how data and model types affect SDM predictions of Alcyonacea probability of presence. We compared predictions from generalized additive models (GAMs) fitted to presence–absence observations over a stratified-random survey design with predictions from maximum entropy models (Maxent) fitted to presence-only bycatch records from commercial fisheries. We use a simulation analysis to show that both model types (i.e., GAM or Maxent) using presence-only bycatch data produced biased estimates of species distribution, while both model types using presence–absence data from a stratified random survey design produced unbiased estimates of species distribution. Additionally, the maxent model fit using presence-only bycatch data produced biased estimates of performance metrics (AUC and TSS) that were overly optimistic. This study demonstrates a need for presence–absence data collected using a robust survey sampling design to fit SDMs that will better inform marine protected area placement while minimizing unnecessary economic losses, such as forgone fishing yield, due to sub-optimal placement.

Authors

Institutions

Publication Details

Journal
Canadian Journal of Fisheries and Aquatic Sciences
Published
2024-10-28
DOI
https://doi.org/10.1139/cjfas-2023-0088
Citations
4
Primary Topic
Coral and Marine Ecosystems Studies
Type
article
Field-Weighted Citation Impact
1.84
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Presence-only fisheries bycatch data produce biased species distribution predictions for Alcyonacean corals on British Columbia’s continental shelf and slope

Allen R. Kronlund, Sean Cox, Christopher N. Rooper, Beau Doherty et al.
4 citations
Canadian Journal of Fisheries and Aquatic Sciences
Coral and Marine Ecosystems Studies
1.84
article

Presence-only fisheries bycatch data produce biased species distribution predictions for Alcyonacean corals on British Columbia’s continental shelf and slope

Allen R. Kronlund, Sean Cox, Christopher N. Rooper, Beau Doherty, Olivia Margaret Gemmell
article en
4 citations

Abstract

Sedentary benthic species such as Alcyonacea corals form critical habitat for fishes and invertebrates. Assessing anthropogenic risks to these organisms requires unbiased, species distribution models (SDMs) that attempt to map probabilities of coral presence in relation to bio-physical ocean characteristics; however, in deep-water settings, the accuracy of SDMs is highly variable and dependent on spatial and taxonomic resolution. Here we investigated how data and model types affect SDM predictions of Alcyonacea probability of presence. We compared predictions from generalized additive models (GAMs) fitted to presence–absence observations over a stratified-random survey design with predictions from maximum entropy models (Maxent) fitted to presence-only bycatch records from commercial fisheries. We use a simulation analysis to show that both model types (i.e., GAM or Maxent) using presence-only bycatch data produced biased estimates of species distribution, while both model types using presence–absence data from a stratified random survey design produced unbiased estimates of species distribution. Additionally, the maxent model fit using presence-only bycatch data produced biased estimates of performance metrics (AUC and TSS) that were overly optimistic. This study demonstrates a need for presence–absence data collected using a robust survey sampling design to fit SDMs that will better inform marine protected area placement while minimizing unnecessary economic losses, such as forgone fishing yield, due to sub-optimal placement.

Canadian Journal of Fisheries and Aquatic SciencesVol. 82
Fisheries and Oceans Canada (CA), Huntsman Marine Science Centre (CA), Simon Fraser University (CA), Interface (United States) (US)
Life below water
Openalex Percentile: Top 14%
Coral and Marine Ecosystems Studies
1.84
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.