Possibility of identifying 1H-indolylaminium trifluoroacetates with antimicrobial activity by mass spectrometry

The present study proposes a convenient approach to identify a series of novel substituted 1H-indol-5-,6-ylaminium trifluoroacetates with antimicrobial activity based on mass spectral data obtained using direct injection into an ion source at an elevated temperature when the salts decompose with the release of counterions: acids and organic bases – substituted 1H-indolylamines. By the presence of ions with m/z 69, 45, 28, 17 in the spectra, it is judged that the salts are formed by trifluoroacetic acid. Using the available literature data on the mass spectrometry of substituted indoles, aromatic amines, and carboxylic acids, substantiated schemes for the decomposition of molecular ions of organic bases, 1H-indolylamines, are compiled and discussed, in which the mechanism of formation and the structure of fragment ions arising under electron ionization conditions are given. The revealed general, as well as individual for individual representatives with a certain character and place of substitution in the indole bicycle, patterns of behavior of 1H-indolylamine radical ions under conditions of high-temperature mass spectral imaging make it possible to judge their structure and, in general, the structure of 1H-indolylamine trifluoroacetates. The approach used in this work can also be used to prove compounds of a similar group based on the analysis of their mass spectra.