Genome-Wide Identification and Analysis of Phospholipase C Gene Family Reveals Orthologs, Co-Expression Networks, and Expression Profiling Under Abiotic Stress in Sorghum bicolor
Phospholipase C (PLC) is an essential enzyme involved in lipid signaling pathways crucial for regulating plant growth and responding to environmental stress. In sorghum, 11 PLC genes have been identified, comprising 6 <i>PI-PLCs</i> and 5 <i>NPCs</i>. Through phylogenetic and interspecies collinearity analyses, structural similarities between SbPLCs and ZmPLCs proteins have been observed, with a particularly strong collinearity between SbPLCs and OsPLCs. Promoter function analysis has shown that <i>SbPLCs</i> are significantly enriched under abiotic stress and hormonal stimuli, like ABA, jasmonic acid, drought, high temperature, and salt. Gene co-expression networks, constructed using a weighted gene co-expression network analysis (WGCNA), highlight distinct expression patterns of <i>SbPLC1</i>, <i>SbPLC3a</i>, and <i>SbPLC4</i> in response to abiotic stress, providing further insights into the expression patterns and interactions of <i>SbPLCs</i> under various environmental stimuli. qRT-PCR results reveal variations in expression levels among most <i>SbPLCs</i> members under different stress conditions (drought, NaCl, NaHCO<sub>3</sub>), hormone treatments (ABA), and developmental stages, indicating both specific and overlapping expression patterns. This comprehensive analysis offers valuable insights into the roles of <i>SbPLCs</i> in sorghum, shedding light on their specific expression patterns, regulatory elements, and protein interactions across different environmental stimuli and developmental stages.
Authors
- Tuo Zeng (ORCID: https://orcid.org/0000-0002-6355-7530)
- Bin Zhu (ORCID: https://orcid.org/0000-0003-3299-3783)
- Xuye Du (ORCID: https://orcid.org/0000-0003-4328-0236)
- Lei Gu (ORCID: https://orcid.org/0000-0001-5119-3517)
- Hongcheng Wang (ORCID: https://orcid.org/0000-0002-1917-1964)
- Qian Zeng (ORCID: https://orcid.org/0000-0001-6153-9462)
- Xingyu Zhang (ORCID: https://orcid.org/0009-0005-6361-1145)
- Feng Yu (ORCID: https://orcid.org/0000-0001-5077-8003)
- Junxing Yu
Institutions
- Guizhou Normal University (CN)
- City University of Hong Kong (HK)
Publication Details
- Journal
- Plants
- Published
- 2024-10-24
- DOI
- https://doi.org/10.3390/plants13212976
- Citations
- 2
- Primary Topic
- Plant Molecular Biology Research
- Type
- article
- Field-Weighted Citation Impact
- 1.20
Funders
- National Natural Science Foundation of China