Genome-Wide Identification and Analysis of Phospholipase C Gene Family Reveals Orthologs, Co-Expression Networks, and Expression Profiling Under Abiotic Stress in Sorghum bicolor

Phospholipase C (PLC) is an essential enzyme involved in lipid signaling pathways crucial for regulating plant growth and responding to environmental stress. In sorghum, 11 PLC genes have been identified, comprising 6 <i>PI-PLCs</i> and 5 <i>NPCs</i>. Through phylogenetic and interspecies collinearity analyses, structural similarities between SbPLCs and ZmPLCs proteins have been observed, with a particularly strong collinearity between SbPLCs and OsPLCs. Promoter function analysis has shown that <i>SbPLCs</i> are significantly enriched under abiotic stress and hormonal stimuli, like ABA, jasmonic acid, drought, high temperature, and salt. Gene co-expression networks, constructed using a weighted gene co-expression network analysis (WGCNA), highlight distinct expression patterns of <i>SbPLC1</i>, <i>SbPLC3a</i>, and <i>SbPLC4</i> in response to abiotic stress, providing further insights into the expression patterns and interactions of <i>SbPLCs</i> under various environmental stimuli. qRT-PCR results reveal variations in expression levels among most <i>SbPLCs</i> members under different stress conditions (drought, NaCl, NaHCO<sub>3</sub>), hormone treatments (ABA), and developmental stages, indicating both specific and overlapping expression patterns. This comprehensive analysis offers valuable insights into the roles of <i>SbPLCs</i> in sorghum, shedding light on their specific expression patterns, regulatory elements, and protein interactions across different environmental stimuli and developmental stages.

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Publication Details

Journal
Plants
Published
2024-10-24
DOI
https://doi.org/10.3390/plants13212976
Citations
2
Primary Topic
Plant Molecular Biology Research
Type
article
Field-Weighted Citation Impact
1.20

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article

Genome-Wide Identification and Analysis of Phospholipase C Gene Family Reveals Orthologs, Co-Expression Networks, and Expression Profiling Under Abiotic Stress in Sorghum bicolor

Tuo Zeng, Bin Zhu, Xuye Du, Lei Gu et al.
2 citations
Plants
Plant Molecular Biology Research
1.20
article

Genome-Wide Identification and Analysis of Phospholipase C Gene Family Reveals Orthologs, Co-Expression Networks, and Expression Profiling Under Abiotic Stress in Sorghum bicolor

Tuo Zeng, Bin Zhu, Xuye Du, Lei Gu, Hongcheng Wang, Qian Zeng, Xingyu Zhang, Feng Yu, Junxing Yu
article en
2 citations

Abstract

Phospholipase C (PLC) is an essential enzyme involved in lipid signaling pathways crucial for regulating plant growth and responding to environmental stress. In sorghum, 11 PLC genes have been identified, comprising 6 <i>PI-PLCs</i> and 5 <i>NPCs</i>. Through phylogenetic and interspecies collinearity analyses, structural similarities between SbPLCs and ZmPLCs proteins have been observed, with a particularly strong collinearity between SbPLCs and OsPLCs. Promoter function analysis has shown that <i>SbPLCs</i> are significantly enriched under abiotic stress and hormonal stimuli, like ABA, jasmonic acid, drought, high temperature, and salt. Gene co-expression networks, constructed using a weighted gene co-expression network analysis (WGCNA), highlight distinct expression patterns of <i>SbPLC1</i>, <i>SbPLC3a</i>, and <i>SbPLC4</i> in response to abiotic stress, providing further insights into the expression patterns and interactions of <i>SbPLCs</i> under various environmental stimuli. qRT-PCR results reveal variations in expression levels among most <i>SbPLCs</i> members under different stress conditions (drought, NaCl, NaHCO<sub>3</sub>), hormone treatments (ABA), and developmental stages, indicating both specific and overlapping expression patterns. This comprehensive analysis offers valuable insights into the roles of <i>SbPLCs</i> in sorghum, shedding light on their specific expression patterns, regulatory elements, and protein interactions across different environmental stimuli and developmental stages.

PlantsVol. 13(21)
Guizhou Normal University (CN), City University of Hong Kong (HK)
National Natural Science Foundation of China
Zero hunger
Openalex Percentile: Top 16%
Plant Molecular Biology Research
1.20
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