The full-length transcriptional of the multiple spatiotemporal embryo-gonad tissues in chicken (Gallus gallus)

We applied PacBio Iso-seq to multiple spatiotemporal embryo-gonad tissues in the male and female chicken, which contain the blastoderm (E0, un-differentiation stage), genital ridge (E3.5-6.5, sex-differentiation stage) and gonads (E18.5, full-sex-differentiation stage). We obtained 51,479 and 48,356 full-length transcripts in male and female chicken embryo, respectively. The comprehensive annotated and evaluated these transcripts. The 1,293 and 1,556 candidate lncRNAs, 5,766 and 4,211 AS events in male and female. Collectively, our data constitutes a grand increase in the known number of lncRNA, AS (Alternative splicing) and Poly(A) during chicken embryo sex-differentiation and plays an important role in improving current genome annotation. In the meantime, the data will be enriched the functional studies in other birds.

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Publication Details

Journal
BMC Genomic Data
Published
2024-10-25
DOI
https://doi.org/10.1186/s12863-024-01273-3
Citations
1
Primary Topic
Animal Genetics and Reproduction
Type
article
Field-Weighted Citation Impact
0.55

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article

The full-length transcriptional of the multiple spatiotemporal embryo-gonad tissues in chicken (Gallus gallus)

Yingjie Niu, Bichun Li, Jiuzhou Song, Qisheng Zuo et al.
1 citations
BMC Genomic Data
Animal Genetics and Reproduction
0.55
article

The full-length transcriptional of the multiple spatiotemporal embryo-gonad tissues in chicken (Gallus gallus)

Yingjie Niu, Bichun Li, Jiuzhou Song, Qisheng Zuo, Hongyan Sun, Ahmed K. Elsayed, Yani Zhang, Guohong Chen, Guobin Chang, Kai Jin
article en
1 citations

Abstract

We applied PacBio Iso-seq to multiple spatiotemporal embryo-gonad tissues in the male and female chicken, which contain the blastoderm (E0, un-differentiation stage), genital ridge (E3.5-6.5, sex-differentiation stage) and gonads (E18.5, full-sex-differentiation stage). We obtained 51,479 and 48,356 full-length transcripts in male and female chicken embryo, respectively. The comprehensive annotated and evaluated these transcripts. The 1,293 and 1,556 candidate lncRNAs, 5,766 and 4,211 AS events in male and female. Collectively, our data constitutes a grand increase in the known number of lncRNA, AS (Alternative splicing) and Poly(A) during chicken embryo sex-differentiation and plays an important role in improving current genome annotation. In the meantime, the data will be enriched the functional studies in other birds.

BMC Genomic DataVol. 25(1)
Suez Canal University (EG), University of Maryland, College Park (US), Yangzhou University (CN)
National Natural Science Foundation of China, China Postdoctoral Science Foundation, Government of Jiangsu Province, Yangzhou University, Priority Academic Program Development of Jiangsu Higher Education Institutions
Zero hunger
Openalex Percentile: Top 25%
Animal Genetics and Reproduction
0.55
DOIOpen Access PDFOpenAlex
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The full-length transcriptional of the multiple spatiotemporal embryo-gonad tissues in chicken (Gallus gallus) — Yingjie Niu, Bichun Li, et al. · BMC Genomic Data (2024) | TGRS Research Map | TGRS