Noninvasive Deep Learning Analysis for Smith–Magenis Syndrome Classification

Smith–Magenis syndrome (SMS) is a rare, underdiagnosed condition due to limited public awareness of genetic testing and a lengthy diagnostic process. Voice analysis can be a noninvasive tool for monitoring and detecting SMS. In this paper, the cepstral peak prominence and mel-frequency cepstral coefficients are used as disease monitoring and detection metrics. In addition, an efficient neural network, incorporating synthetic data processes, was used to detect SMS in a cohort of individuals with the disease. Three study cases were conducted with a set of 19 SMS patients and 292 controls. The three study cases employed various oversampling and undersampling techniques, including SMOTE, random oversampling, NearMiss, random undersampling, and 16 additional methods, resulting in balanced accuracies ranging from 69% to 92%. This is the first study using a neural network model to focus on a rare genetic syndrome using phonation analysis data. By using synthetic data (oversampling and undersampling) and a CNN, it was possible to detect SMS with high levels of accuracy. Voice analysis and deep learning techniques have proven to be a useful and noninvasive method. This is a finding that may help in the complex identification of this syndrome as well as other rare diseases.

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Publication Details

Journal
Applied Sciences
Published
2024-10-25
DOI
https://doi.org/10.3390/app14219747
Citations
2
Primary Topic
RNA Research and Splicing
Type
article
Field-Weighted Citation Impact
0.47
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Noninvasive Deep Learning Analysis for Smith–Magenis Syndrome Classification

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2 citations
Applied Sciences
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article

Noninvasive Deep Learning Analysis for Smith–Magenis Syndrome Classification

Elena Garayzábal, Agustín Álvarez-Marquina, Irene Hidalgo de la Guía, Esther Núñez-Vidal, Raúl Fernández-Ruiz, Cristina Conde, Nikola Hristov-Kalamov, Francisco Domínguez, R. Martínez
article en
2 citations

Abstract

Smith–Magenis syndrome (SMS) is a rare, underdiagnosed condition due to limited public awareness of genetic testing and a lengthy diagnostic process. Voice analysis can be a noninvasive tool for monitoring and detecting SMS. In this paper, the cepstral peak prominence and mel-frequency cepstral coefficients are used as disease monitoring and detection metrics. In addition, an efficient neural network, incorporating synthetic data processes, was used to detect SMS in a cohort of individuals with the disease. Three study cases were conducted with a set of 19 SMS patients and 292 controls. The three study cases employed various oversampling and undersampling techniques, including SMOTE, random oversampling, NearMiss, random undersampling, and 16 additional methods, resulting in balanced accuracies ranging from 69% to 92%. This is the first study using a neural network model to focus on a rare genetic syndrome using phonation analysis data. By using synthetic data (oversampling and undersampling) and a CNN, it was possible to detect SMS with high levels of accuracy. Voice analysis and deep learning techniques have proven to be a useful and noninvasive method. This is a finding that may help in the complex identification of this syndrome as well as other rare diseases.

Applied SciencesVol. 14(21)
Universidad Complutense de Madrid (ES), Universidad Rey Juan Carlos (ES), Universidad Autónoma de Madrid (ES), Universidad Politécnica de Madrid (ES)
Quality Education
Openalex Percentile: Top 34%
RNA Research and Splicing
0.47
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