Synthesis, XRD structural analysis and theoretical studies of a potential inhibitor against rheumatoid arthritis (RA)

This work focused on analyzing the properties of N-(5-nitrothiazol-2-yl)furan-2-carboxamide (C<sub>8</sub>H<sub>5</sub>N<sub>3</sub>O<sub>4</sub>S, NTFC) as a possible inhibitor of the rheumatoid arthritis process. The synthesis of NTFC was carried out and good-quality crystals were obtained and studied by NMR (<sup>1</sup>H and <sup>13</sup>C), DEPT 135, UV-Vis, IR, MS and single-crystal X-ray diffraction. The structure of NTFC consists of two rings, thiazole and furan, and a central C-N-C(=O)-C segment, which appears to be planar. This central amide segment forms angles of 2.61 (10) and 7.97 (11)° with the planes of the thiazole and furan rings, respectively. The crystal structure of NTFC exhibits N-H...N, N-H...O and C-H...O hydrogen bonds, and C-H...π and π-π interactions that facilitate self-assembly and the formation of hydrogen-bonded dimers, which implies the appearance of R<sub>2</sub><sup>2</sup>(8) graph-set motifs in this interaction. The stability of the dimeric unit is complemented by the formation of strong intramolecular C-S...O interactions of chalcogen character, with an S...O distance of 2.6040 (18) Å. Hirshfeld surface (HS) analysis revealed that O...H/H...O interactions were dominant, accounting for 36.8% of the total HS, and that N-H...N interactions were fundamental to the formation of the dimeric structure. The molecular electrostatic potential (MEP) map showed a maximum energy of 46.73 kcal mol<sup>-1</sup> and a minimum of -36.06 kcal mol<sup>-1</sup>. The interaction energies of molecular pairs around NTFC are highest for those interactions linked by N-H hydrogen bonds. The properties of the NTFC ligand as a potential inhibitor of the DHODH (dihydroorotate dehydrogenase) enzyme were evaluated by molecular docking, showing coupling energies very close to those obtained with the control drug for rheumatoid arthritis, i.e. leflunomide.

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Publication Details

Journal
Acta Crystallographica Section C Structural Chemistry
Published
2024-10-24
DOI
https://doi.org/10.1107/s2053229624010106
Citations
1
Primary Topic
Synthesis and biological activity
Type
article
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0.25
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article

Synthesis, XRD structural analysis and theoretical studies of a potential inhibitor against rheumatoid arthritis (RA)

Kevin Arango‐Daraviña, Rodolfo Moreno‐Fuquen, Pedro H. O. Santiago, Javier Ellena et al.
1 citations
Acta Crystallographica Section C Structural Chemistry
Synthesis and biological activity
0.25
article

Synthesis, XRD structural analysis and theoretical studies of a potential inhibitor against rheumatoid arthritis (RA)

Kevin Arango‐Daraviña, Rodolfo Moreno‐Fuquen, Pedro H. O. Santiago, Javier Ellena, Kevin Monge-Hoyos
article en
1 citations

Abstract

This work focused on analyzing the properties of N-(5-nitrothiazol-2-yl)furan-2-carboxamide (C<sub>8</sub>H<sub>5</sub>N<sub>3</sub>O<sub>4</sub>S, NTFC) as a possible inhibitor of the rheumatoid arthritis process. The synthesis of NTFC was carried out and good-quality crystals were obtained and studied by NMR (<sup>1</sup>H and <sup>13</sup>C), DEPT 135, UV-Vis, IR, MS and single-crystal X-ray diffraction. The structure of NTFC consists of two rings, thiazole and furan, and a central C-N-C(=O)-C segment, which appears to be planar. This central amide segment forms angles of 2.61 (10) and 7.97 (11)° with the planes of the thiazole and furan rings, respectively. The crystal structure of NTFC exhibits N-H...N, N-H...O and C-H...O hydrogen bonds, and C-H...π and π-π interactions that facilitate self-assembly and the formation of hydrogen-bonded dimers, which implies the appearance of R<sub>2</sub><sup>2</sup>(8) graph-set motifs in this interaction. The stability of the dimeric unit is complemented by the formation of strong intramolecular C-S...O interactions of chalcogen character, with an S...O distance of 2.6040 (18) Å. Hirshfeld surface (HS) analysis revealed that O...H/H...O interactions were dominant, accounting for 36.8% of the total HS, and that N-H...N interactions were fundamental to the formation of the dimeric structure. The molecular electrostatic potential (MEP) map showed a maximum energy of 46.73 kcal mol<sup>-1</sup> and a minimum of -36.06 kcal mol<sup>-1</sup>. The interaction energies of molecular pairs around NTFC are highest for those interactions linked by N-H hydrogen bonds. The properties of the NTFC ligand as a potential inhibitor of the DHODH (dihydroorotate dehydrogenase) enzyme were evaluated by molecular docking, showing coupling energies very close to those obtained with the control drug for rheumatoid arthritis, i.e. leflunomide.

Acta Crystallographica Section C Structural ChemistryVol. 80(11)
Universidade de São Paulo (BR), Universidad del Valle (CO)
Openalex Percentile: Top 47%
Synthesis and biological activity
0.25
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